BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904420

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13620.1 | Symbols:  | Amino acid permease family protein | ...   261    3e-69


> AT3G13620.1 | Symbols:  | Amino acid permease family protein 
| chr3:4450745-4452624 REVERSE LENGTH=1664
Length=1664

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 181/199 (91%), Gaps = 8/199 (4%)
 Strand=Plus/Plus

Query  1    CTCTTCCCTGTTCTTGAATCCGGGTGGCCCCGAAATGTCTGCATATTCGCCTCAACAGAC  60
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||   | |  
Sbjct  474  CTCTTCCCTGTTCTTGAATCCGGATGGCCTCGAAATGTCTGCATATTCGCCT---C-G--  527

Query  61   AACAGTGGTCTTAt-ttttttAAACTATACTGGCTTAGCTATTGTGGGTTACGCAGCTGT  119
             || |||||||| | ||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct  528  -ACGGTGGTCTTGTCTTTCTTAAACTATACTGGCTTAGCCATTGTAGGTTACGCAGCTGT  586

Query  120  TGTTCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTTATGTCGGCTATGGCAATCCCTAA  179
            ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  587  TGTGCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTCATGTCGGCTATGGCTATCCCTAA  646

Query  180  GATCAAACCTCACCGTTGG  198
            |||||||||||||||||||
Sbjct  647  GATCAAACCTCACCGTTGG  665


 Score =  110 bits (59),  Expect = 1e-23
 Identities = 63/65 (97%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  198  GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACATTCCCGTTGGCGCTTCTTATCG  257
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  748  GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACGTTCCCTTTGGCGCTTCTTATCG  807

Query  258  CTGTG  262
            |||||
Sbjct  808  CTGTG  812


 Score = 99.0 bits (53),  Expect = 2e-20
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  263   GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC  315
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1003  GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC  1055



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5