BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904420 Length=324 Score E Sequences producing significant alignments: (Bits) Value AT3G13620.1 | Symbols: | Amino acid permease family protein | ... 261 3e-69 > AT3G13620.1 | Symbols: | Amino acid permease family protein | chr3:4450745-4452624 REVERSE LENGTH=1664 Length=1664 Score = 261 bits (141), Expect = 3e-69 Identities = 181/199 (91%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 1 CTCTTCCCTGTTCTTGAATCCGGGTGGCCCCGAAATGTCTGCATATTCGCCTCAACAGAC 60 ||||||||||||||||||||||| ||||| |||||||||||||||||||||| | | Sbjct 474 CTCTTCCCTGTTCTTGAATCCGGATGGCCTCGAAATGTCTGCATATTCGCCT---C-G-- 527 Query 61 AACAGTGGTCTTAt-ttttttAAACTATACTGGCTTAGCTATTGTGGGTTACGCAGCTGT 119 || |||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 528 -ACGGTGGTCTTGTCTTTCTTAAACTATACTGGCTTAGCCATTGTAGGTTACGCAGCTGT 586 Query 120 TGTTCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTTATGTCGGCTATGGCAATCCCTAA 179 ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 587 TGTGCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTCATGTCGGCTATGGCTATCCCTAA 646 Query 180 GATCAAACCTCACCGTTGG 198 ||||||||||||||||||| Sbjct 647 GATCAAACCTCACCGTTGG 665 Score = 110 bits (59), Expect = 1e-23 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 198 GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACATTCCCGTTGGCGCTTCTTATCG 257 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 748 GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACGTTCCCTTTGGCGCTTCTTATCG 807 Query 258 CTGTG 262 ||||| Sbjct 808 CTGTG 812 Score = 99.0 bits (53), Expect = 2e-20 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 263 GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC 315 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC 1055 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15080324700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5