BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904462
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15330.1 | Symbols: | pseudogene of the NLI interacting fac... 811 0.0
> AT3G15330.1 | Symbols: | pseudogene of the NLI interacting factor
(NIF) protein family | chr3:5158749-5159597 FORWARD LENGTH=849
Length=849
Score = 811 bits (439), Expect = 0.0
Identities = 517/555 (93%), Gaps = 3/555 (1%)
Strand=Plus/Plus
Query 13 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTCGTTCGTCACGGAATCTGCTTC 72
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 43 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTTGTTCGTCACGGAATCTGCTTC 102
Query 73 ACCTGTAAAACGAAGGTCAGCTACGTCGAAGGTCGAGCATTCGATTATCTTTTCTCCGGT 132
||||||||| |||||| || | ||| | || |||| ||||| ||||||||||||||||
Sbjct 103 GCCTGTAAAAAGAAGGTGAGTTGTGTCCATGGCCGAGAATTCGGTTATCTTTTCTCCGGT 162
Query 133 TTACGCCTAAGCCACGAAGCTGTATCCTTTACAAAGCAACTCACAACCCTAGTCTCAGTC 192
||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 163 TTACGTCTGAGTCACGAAGCTGTATCCTTTACAAAGCATCTCACAACCCTAGTCTCAGTC 222
Query 193 TACGGACACAAGAAGCTTCACTTATTAGTCCTTGACTTGGACCACACGCTAATCCACTCC 252
||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 223 TACGGACGCAAGAAGCTTCAC---TTGGTACTTGACTTGGACCACACGCTAATCCACTCC 279
Query 253 ATGAAGACTTTAAATCTTTCCAACGCAGAGAAGTATCTAATCAAAGAAGAGAAATCAGGT 312
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 280 ATGAAGACTTCAAATCTTTCCAAAGCAGAGAAATATCTAATCAAAGAAGAGAAATCAGGT 339
Query 313 TCAAGGAAAGATCTGCGAAAATATAACGATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 372
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 340 TCAAGGAAAGATCTGCGTAAATATAACAATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 399
Query 373 GAGTTCCTTAAAGAAGCCAACAAGCTTTTTACAATGACTGCTTACACAAGGGGAGGTTCG 432
||||||||||||||||||||||||||||| || |||||||||||||||| || |||||
Sbjct 400 GAGTTCCTTAAAGAAGCCAACAAGCTTTTCACCATGACTGCTTACACAAAAGGCGGTTCC 459
Query 433 ACTTACGCTAAAGCTGTTGTGAGGATGCTTGATCCAAACAAAATCTATTTCGGGGATCGA 492
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 460 ACTTACGGTCAAGCTGTTGTGAGGATGATTGATCCAAACAAAATCTATTTCGGGGATCGA 519
Query 493 ATAATAACCAGAAAAGAGAGTCCTGACTTAAAAACACTTGATCTTGTCTTAGCTGATGAG 552
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 520 ATAATAACTAGAAAAGAGAGTCCTGACTTGAAAACACTTGATCTTGTCTTAGCTGATGAG 579
Query 553 CGTGGAATCGTGATT 567
|||||||||||||||
Sbjct 580 CGTGGAATCGTGATT 594
Score = 287 bits (155), Expect = 1e-76
Identities = 197/218 (90%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 569 GAAACTTGTTGGAGATCACAAGCTACTTCTATTTCAAAAACGATCACAGAAACATCATGA 628
|||||||||||||||||||||||||||| ||||||||||||||| || |||||| ||||
Sbjct 632 GAAACTTGTTGGAGATCACAAGCTACTTTTATTTCAAAAACGATGGCAAAAACATGATGA 691
Query 629 GGTCAAGACTATCGTACGCAGAGAGGAAGACTGACGAGAGTAGAACCAAAAGAGCATTGG 688
|||||||| |||| ||||| |||||||||| ||| ||||| |||||||||||||||||||
Sbjct 692 GGTCAAGATTATCCTACGCCGAGAGGAAGAGTGATGAGAGCAGAACCAAAAGAGCATTGG 751
Query 689 TGAAACTTCTCAAATTCCTCAAGGAAGTTCATAATGGATTCTTTACCTGTGGACTTGAAG 748
|||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 752 TGAATCTTCTGAAATTCCTCAAAGAAGTTCATAACGGATTCTTTACCTGTGGACTTGAAG 811
Query 749 AACAGTTGGATATCAAGGACGTTAGGTACTTGATAAAG 786
|| |||| ||| | |||||||| ||||| |||||||||
Sbjct 812 AAGAGTTAGATTTTAAGGACGTCAGGTATTTGATAAAG 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5