BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904498
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15550.1 | Symbols: | unknown protein; Has 25732 Blast hits... 3465 0.0
AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family pr... 418 1e-115
> AT3G15550.1 | Symbols: | unknown protein; Has 25732 Blast hits
to 16979 proteins in 961 species: Archae - 144; Bacteria
- 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses
- 94; Other Eukaryotes - 8232 (source: NCBI BLink). | chr3:5267351-5270118
FORWARD LENGTH=2213
Length=2213
Score = 3465 bits (1876), Expect = 0.0
Identities = 2087/2190 (95%), Gaps = 9/2190 (0%)
Strand=Plus/Plus
Query 1 ATGGACGATTATGGTATAACGGAAGAAGATCTGGTTATCGAGGAAGCTCAGGGCTATCCG 60
|||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 4 ATGGGCGATTATGGTATAACGGAGGAAGATCTGGTGATCGAGGAAGCTCAAGGCTATCCT 63
Query 61 CGAGCTTACGCGAAGATCTGTCGCGATTTTGAAGTTTTTCCGTACAGAAATGGTCCTCCT 120
|||||||| | |||||||||||||||||||| | |||||| |||| |||||||||||||
Sbjct 64 AGAGCTTACACTAAGATCTGTCGCGATTTTGATGCTTTTCCTTACAAAAATGGTCCTCCT 123
Query 121 TTCACTTTCATGCCCTACATTCTTCAGCAGAACGAGAGCTTGAGATGCAGAGAAGTAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTCACTTTCATGCCCTACATTCTTCAGCAGAACGAGAGCTTGAGATGCAGAGAAGTAGAT 183
Query 181 GC-GATGTTTCCAGTAATTGATCCCAAAGCGAGACCAACAACAAAACCCAAGATTTTCCT 239
| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 184 -CAGATGTTTCCAGTGATTGATCCGAAAGCGAGACCAACAACAAAACCCAAGATCTTCCT 242
Query 240 CAGTCTCCTCTGGAAACAGCTTAATCATCTAGGCAATGCTGGATTTGATCCAGCTGTTAT 299
||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 243 CAGTCTCTTGTGGAAACAGCTTAATCATCTAGGAAATGCAGGATTTGATCCAGCTGTTAT 302
Query 300 TCGGATTGATCCATATGGGAATGTTGTTTACTTCCACGCTGATTCAGCTTCTCCTCTTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCGGATTGATCCATATGGGAATGTTGTTTACTTCCACGCTGATTCAGCTTCTCCTCTTGC 362
Query 360 TTGGAGTTTTGACCATTGGTTCCCTTGCTCAAGAGGTGGTCTAACAGTACCAAGCAACCT 419
|||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 363 TTGGAGTTTTGATCATTGGTTCCCTTGCTCAAGAGGAGGTTTAACAGTACCAAGCAACCT 422
Query 420 AAGGATAGTGCAATGGCAAGCACGCAAGAACAAGAAAGACAAGCTTGAGTTCTTAGTACC 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 423 AAGGATAGTGCAATGGCAAGCACGCAAGAACAAGAAGGACAAGCTTGAGTTCTTAGTACC 482
Query 480 ATGGTGGGATCTTCAAGTTGGTATTTCAGTGAATCAGTTCTTGTCGATTTTCGCTGCTTC 539
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 483 ATGGTGGGATCTTCAAGTTGGTATTTCTGTGAATCAGTTCTTATCGATTTTCGCTGCTTC 542
Query 540 AAGTTCTGATTTCAGGAGGAGAGCATTTTCATTCTTGTTCAAAGAAGGCGAAAACGAAGA 599
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 543 TAGTTCTGATTTCAGGAGGAGGGCATTTTCATTCTTGTTCAAAGAAGGCGAAAACGAAGA 602
Query 600 ACTTAACGGTATACAAATGGTTGAGTCACACCATTTTCCACAACATTTTGTTGAATCAAA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 ACTTAACGGTATACAAATGGTTGAATCACACCATTTTCCACAACATTTTGTTGAATCAAA 662
Query 660 GGAGAAGTTCGGGCTTGCTTCAGCTGCAGTTGTTGTTTCTAGAAGAGATCCTTATGACCC 719
|| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 663 AGACAAGTTTGGGCTTGCTTCAGCTGCAGTTGTTTTTTCAAGAAGAGATCCTTATGACCC 722
Query 720 TTCATTAGTCTTGAGATCACTCGATTGCAATCGACAAACACCTGCAAGGAAGATGAGATT 779
|||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct 723 TTCATTAGTCTTGAGATCCCTTGATTACAATCGTCAAACACCTGCAAGGAAGATGAGATT 782
Query 780 CGGTGCAGCCAAAGAGAATGAGACTCCAGACTTAATGAAAAATCCGTATCAAGCCATTGT 839
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGGTGCAACCAAAGAGAATGAGACTCCAGACTTAATGAAAAATCCGTATCAAGCCATTGT 842
Query 840 TGCTGCGAGGGACTCATTGAGACACCGAGAGGAAGCGCAGAATATGAGAGCCGAGATGAA 899
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 TGCTGCGAGGGACTCACTGAGACACCGGGAGGAAGCGCAGAATATGAGAGCCGAGATGAA 902
Query 900 AAAGTTAGATGATGAAACAAATGATTTGACAAGAAAGAACAGTGAAGATCGGCTTAGTAT 959
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 903 GAAGTTGGATGATGAAACGAATGATTTGACAAGAAAGAACAATGAAGATCGGCTTACTAT 962
Query 960 TCAGGAGCTAGAGAATGAGCTGGTTAAGCGAAGAAGAAGAGCTGAAAAGTGCAGGAGATT 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 963 TCAGGAGCTAGAGAATGAGCTGGTTAAGCGAAGAAGAAGGGCTGAAAAGTGCAGGAGATT 1022
Query 1020 GGCAGAAGCTCAATGCTCGTATAGGAATACACTTGAGAAGATGATCCGTGATGCTATGCA 1079
||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1023 GGCAGAATCTCAATGCTCTTACAGGAATACACTCGAGAAGATGATCCGTGATGCTATGCA 1082
Query 1080 CCAGAGTGTTGTGTATAAAGAACAAGTGAGGTTAAACCAGGCTGCGAGTAGTGCGCTTAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CCAGAGTGTTGTGTATAAAGAACAAGTGAGGTTAAACCAGGCTGCGAGTAGTGCGCTTAT 1142
Query 1140 GGCAAGATTAGAGGCGCAAAAGGCGATTTGTGATGGTTCAGAGAAAGAACTTCACAAGAA 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GGCAAGATTAGAGGCGCAAAAAGCGATTTGTGATGGTTCAGAGAAAGAACTTCACAAGAA 1202
Query 1200 GTTTAAAGAAAGAGTAGAA-CTGGAGAATCAAGTGAGGCCTGAGTTAGAGAAAGCAAGGA 1258
|||||||||||||| || | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 1203 GTTTAAAGAAAGAG-AGGAGCTGGAGAATCTAGTGAAGCCTGAGTTAGAGAAAGCAAGGA 1261
Query 1259 AAAGATCAAGACTTTTGCTGAATGATGAAGATGACTTGTTGCTAGACGATAGAGACAGGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AAAGATCAAGACTTTTGCTGAATGATGAAGATGACTTGTTGCTAGACGATAGAGACAGGA 1321
Query 1319 AGTTATCTCTGTATCTTCCAGGAACAAGTGAAGAAACGTCGTCACACAAAGAGTTAAGGG 1378
| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1322 ACTTATCTCTGTATCTTCCAGGAACAAGTGAAGAGACGTCGTCACATAAGGAGTTAAGGG 1381
Query 1379 TACACTTTGAAGAAGAGCATGAAGCAGCGGCTTCTGAGGCTGAAACTAAGAAGCATTGTG 1438
|||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 1382 TACATTTTGAAGAAGAGCATAAAGCAGCAGCTTCTGAGGCTGAAATTAAGAAGCATTGTG 1441
Query 1439 AAATAGAGGAGGA--A-GAGGAACAAAAAACTCCAGAGGTATCTGAGAAGTCTCTTGTTG 1495
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct 1442 AAATAGAGGAGGAGGAAGAGGAACAGAAGACTCCAGAGGTATCTGAGAAGTCTCTTGTTG 1501
Query 1496 CGTTGGAAGATAAAAAACCGGTTGAAGAAAAGCTAGATGTAGAAGAAGGGAAGAGAGGCA 1555
||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 1502 CGTTGGAAGATGATAAACCGGTTGAAGAAAAGCCAGATGTAGAAGAGGGGAAGAGAAGCA 1561
Query 1556 GCAGAAGCTTCAGAGCATTCCATGTTTTCAAGGCACCAGAGAAGGAGGAAGATGAGGAAA 1615
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1562 ACAGAAGCTTCAGAGCATTCCATGTTTTCAAGGCACCTGAGAATGAGGAAGATGAGGAAA 1621
Query 1616 GCAGGAGAGAGCGAGGGAAAGGAAATGTTGAGAAATGGCTTCATATTTTACTGGAGAACA 1675
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1622 GCAGGAGAGAGCGAGGGAAAGGAAACGTTGAGAAATGGCTTCATATTTTACTGGAGAACA 1681
Query 1676 ACAACAAAAGCGATCCACACGATCTTGAAACCGAAAAAAGCAAGAAGATTGATGAAATGA 1735
||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 1682 ACAGCAAAAGCGATCCACACGATCTTCAAACAGAGAAAAGCAAGAAGATTGATGAAATGA 1741
Query 1736 TAGAGAAACTGGACCACAAGTTCCCTTTTCTTGAAAAGGTTGATGAAGAAGAAGTGGACT 1795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1742 TAGAGAAACTGGACCACAAGTTCCCTTTTCTTGAAAAGGTTGATGAAGAAGAAGTGGATT 1801
Query 1796 TGCAGTTGCAGGCTAAGGAACCAAACAACAACACAAGCAAGGTT-AGTGAAGAAGAAGTG 1854
|| |||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||
Sbjct 1802 TGAAGTTGCAGGCTAAGGAGGCAAACAACAACACAAGCAAGGTTGA-TGAAGAAGAGGTG 1860
Query 1855 GACTTGCAGTTGCAGGCTAAGGAGGCTAACAAGAACACAAGCAAGGTGGAAACAAGAACT 1914
|||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||
Sbjct 1861 GACTTGCAGTTGCAGGCTAAGGAGACAAACAACAACACAAGCAAGGTGGAAATAAGAACT 1920
Query 1915 GAAAGTTCTCGTAGAAGCAGAATGAGTTTTGATTTAAAGAACACACCAGAGAAGAGCGGC 1974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1921 GAAAGTTCTCGTAGAAGCAGAATGAGTTTTGATTTAAAGAACACACCAGAGAAGAGTGGC 1980
Query 1975 AGAGACAAAGTGGTGAAGAGATCAGAGAGTGCTAGAACCTTCAGAAGGATTCCATCATCT 2034
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1981 AGAGACAAAGTGGTGAAGAGATCAGAGAGTGCTAGAACCTTCACAAGGATTCCATCATCT 2040
Query 2035 CCATCACTCATCTTCGGAATGAAAAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTT 2094
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CCATCACTCATCTTTGGAATGAAAAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTT 2100
Query 2095 TCAAGAAACGACGATGAGAACGAGTATCTTGTTAAGAACAACTTCATCAAGTCTTCTCTT 2154
||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2101 TCAGGAAACGACGATGAGAATGAGTATCTTGTCAAGAACAACTTCATCAAGTCTTCTCTT 2160
Query 2155 CAATCAATCAAACGAGCTGTCAAATTCTAG 2184
||| ||||||||||||||||||||||||||
Sbjct 2161 CAAACAATCAAACGAGCTGTCAAATTCTAG 2190
> AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:5269849-5271922 REVERSE LENGTH=1999
Length=1999
Score = 418 bits (226), Expect = 1e-115
Identities = 240/247 (97%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 1938 GAGTTTTGATTTAAAGAACACACCAGAGAAGAGCGGCAGAGACAAAGTGGTGAAGAGATC 1997
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1999 GAGTTTTGATTTAAAGAACACACCAGAGAAGAGTGGCAGAGACAAAGTGGTGAAGAGATC 1940
Query 1998 AGAGAGTGCTAGAACCTTCAGAAGGATTCCATCATCTCCATCACTCATCTTCGGAATGAA 2057
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1939 AGAGAGTGCTAGAACCTTCACAAGGATTCCATCATCTCCATCACTCATCTTTGGAATGAA 1880
Query 2058 AAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTTTCAAGAAACGACGATGAGAACGA 2117
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1879 AAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTTTCAGGAAACGACGATGAGAATGA 1820
Query 2118 GTATCTTGTTAAGAACAACTTCATCAAGTCTTCTCTTCAATCAATCAAACGAGCTGTCAA 2177
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1819 GTATCTTGTCAAGAACAACTTCATCAAGTCTTCTCTTCAAACAATCAAACGAGCTGTCAA 1760
Query 2178 ATTCTAG 2184
|||||||
Sbjct 1759 ATTCTAG 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5