BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904502
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15605.4 | Symbols: | nucleic acid binding | chr3:5287988-5... 1620 0.0
> AT3G15605.4 | Symbols: | nucleic acid binding | chr3:5287988-5290971
FORWARD LENGTH=1629
Length=1629
Score = 1620 bits (877), Expect = 0.0
Identities = 1055/1139 (93%), Gaps = 20/1139 (2%)
Strand=Plus/Plus
Query 298 CGCTTCTTGGGAGACTATGAGCCACAATGGGATGAGTTGTTTCTGGCTTGTGGTGATGAA 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGCTTCTTGGGAGAGTATGAGCCACAATGGGATGAGTTGTTTCTGGCTTGTGGTGATGAA 369
Query 358 AAAGGGGTTTCCAATATCAATGATGTCGAGACCATCATGGGGAAATGCAATGTTGTATGC 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 370 AAAGGGGTTTCCAATATCAATGATGTGGAGACCATCATGGGGAAATGCAATGTTGTATGC 429
Query 418 ACATCTGAGGACCGAAGAAATCCACGACCAGGAAGCAATGAGTTGAGGAGAGCTAACTAT 477
|||||||| ||||||||||| ||||||||||||| ||| ||| || |||||||||| |||
Sbjct 430 ACATCTGATGACCGAAGAAACCCACGACCAGGAACCAAGGAGCTGCGGAGAGCTAAATAT 489
Query 478 GTCTTCTCCCGCACCTTCGATACAATACTGAGAATTATATCAGAAGACTTTGCAGATGCT 537
||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 490 ATCTTCTCCCGCACTTTTGATACAAGACTCAGAATTATATCAGAAGACTTTGCAGATGCT 549
Query 538 ATAGCTGGAATTGGAGTGGATAAACTCTTCAACATGAGAAGAGATAAACAGCCTGTAAAA 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ATAGCCGGAATTGGAGTGGATAAACTCTTCAACATGAGAAGAGATAAACAGCCTGTAAAA 609
Query 598 CGTGTAAACTCAAGCGCAGCTGCCAGTACTAGGGCTTCTCCAGTTAAA-CATTTTCGTCC 656
||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 610 CGTCTAAACTCAAGCGCAGCTGCCATTACTAGGGCTTCTCCAGTTAAATC-TTTTCGTCC 668
Query 657 AGATTTGGGATCAACAAAGTTAGGAAAAAATGATAACAGAGATGGAAAGCTGATGAGTAG 716
|||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 669 AGATTTGGGATCAACAAAGTTAGGTAAACATGATAACAGAGATGCAAAGCTGATGAGTAG 728
Query 717 AACAAGCTCGTTAAAGAAAGTCTCTTTTCTGGAGGACCGTGCTGGTCATGTACATGTGAA 776
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 729 AACAAGCTCGTTAAAGAAAGTCACTTTTCTGGAGGACCGTGCTGATCATGTACATGTGAA 788
Query 777 GAAA-AACCCTCCTATCAATACTGATACCACGT-CAAGAGGTC-----C-GATACTCAAA 828
|| ||||||||| |||||||||| ||||| | ||||||||| | ||||||||||
Sbjct 789 -AAGGAACCCTCCTGTCAATACTGAAACCAC-TACAAGAGGTCAGATACCGATACTCAAA 846
Query 829 ACCAGAGCATTTGGGGAGTTATATGCTTCAGGTTCATCAGTCGA-TGCTAAGCCTTCTAA 887
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 847 ACAAGAGCATTTGGGGAGTTATATGCTTCAGGTTCATCAGT-GAATGCTAAGCCTTCTAA 905
Query 888 AAAGAGGAAGCTTATACTCAACACACCAGAAACAGATGATTCAGATGATCCAGGCCCTCA 947
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 906 AAAGAGAAAGCTTATACTCAACACGCCAGAAACAGATGATTCAGATGATCAAGGCCCTCA 965
Query 948 ATCAGGAGAGAAGAAAATCATGAAAAATCCTCCTCTTATAGAAAAAGCTCCTAGTCAGAA 1007
|||||||||||||||| | || ||||||||||||||| ||||||| ||||| ||||||||
Sbjct 966 ATCAGGAGAGAAGAAATTAATTAAAAATCCTCCTCTTGTAGAAAAGGCTCCAAGTCAGAA 1025
Query 1008 CATCGAGaaaaaaaGCTGGTACAAGAAATTGCCTTTTGAGGACGAACTAAAACCGGCTAT 1067
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1026 CATCGAGAAAAAAAGCTGGTACAAGAAACTGCCTTTTGAGGACGAACTAAAGCCGGCTAT 1085
Query 1068 AGAAAAAGGTAGGGTGCTCTTAATTGAGAACCTTGAACCATCATACACATCGCTGGAGGT 1127
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1086 AGAAAAAGGTAGGGTGCTCTTAATTGAGAACCTGGAACCATCATACACATCGCTGGAGGT 1145
Query 1128 AGAGGATCTATGTAGGCAAGCTTTCAAAGAAGCAGTTGATGCTAAGATGATCCCTTCAAG 1187
|||| ||| | ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1146 AGAGTTTCTTTTTAGGCAAGCATTCAAAGAAGGAGTTGATGCTAAGATGATCCCTTCAAG 1205
Query 1188 TCTTGTGTCTAGCCCACATAGTGGTATATGCAGGGCTCTTGTGATTTTTGGAACCACAAA 1247
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1206 TCCCATGTCTAGCCCACATAGTGG------CAGGGCTCTTGTGATTTTTGGAACCACAAA 1259
Query 1248 GGCAGCTGATTCTGCCATGTCGCAGTTAACTGAAAAGTGCCTGATGTTACCTGGCCAGAG 1307
||||||||||||||| ||||||| ||||| |||| | || ||||||||| ||||||||||
Sbjct 1260 GGCAGCTGATTCTGCTATGTCGCGGTTAAATGAAGATTGTCTGATGTTATCTGGCCAGAG 1319
Query 1308 ACCTCTATTGGGTAGCAAAAAGGTCCCACTCGAAATTGGAAGATGTAGAAGCTTTACTGG 1367
| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1320 AGCTCTAACGGGTAGCAAAAATGTCCCAGTCGAAATTGGAAGATGTAGAAGCTTTACTGG 1379
Query 1368 CCATTTTAGCATGGTGGATAGATCAATGATGACAACTCAGAAGGTAAGTTGTTGCATTA 1426
|||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1380 CCATTTTAACATGGTGGATAGATCTCTGATGACGGCTCAGAAGGTAAGTTGTTGCATTA 1438
Score = 279 bits (151), Expect = 4e-74
Identities = 175/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 2 TGGGAATATCACAGCAGGATAACTTCTCTATGTTGCAATCGAATAGTGCCGGTGGAGTAG 61
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 126 TGGG-ATATCTCAGCAGGATAACTTCTCTATGTTGCAATCGAATAGTGCTGGTGGAGAAG 184
Query 62 AGAAACCTGATTTTAAGTGGGGTGCTAAGAGAGGGGTGGGTCGGAAAGATAATAAAGTCC 121
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 185 ACAACCCTGATTTTAAGTGGGGTGCTAAGAGAGGGGTGGGACGGAAAGATAATAAAGTCC 244
Query 122 GGTTCTATGAATCATTTACC-TATGACGGCATCGAGTACTGGCTTTTTGACTGTGCTTAC 180
|||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||
Sbjct 245 GGTTCTATGAATCATTTACCCT-TGAGGGCATCGAGTACCGGCTTTTTGACTGTGCTTAC 303
Query 181 TTTTAC 186
||||||
Sbjct 304 TTTTAC 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5