BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904514
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15700.1 | Symbols: | P-loop containing nucleoside triphosp... 1759 0.0
AT1G52660.1 | Symbols: | P-loop containing nucleoside triphosp... 791 0.0
> AT3G15700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5321136-5322376
REVERSE LENGTH=1128
Length=1128
Score = 1759 bits (952), Expect = 0.0
Identities = 1071/1129 (95%), Gaps = 5/1129 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGATTTCAAGAGTATGGTGACACGATGCATCTACGTAGGAAAAGAGAACGAT 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGGAAAGATTTCAAGAGTATGGTGACACGATGCATCTACGTCGGAAAAGAGAACGAT 60
Query 61 AACGTGACGAAACTGAAAACCGCGACGGAGGAGCTCAAGGATTTACGCAACAATGTGATG 120
||||||| ||| ||||||||||| || ||||||||||| ||||||||||||| |||||||
Sbjct 61 AACGTGAAGAAGCTGAAAACCGCTACAGAGGAGCTCAAAGATTTACGCAACATTGTGATG 120
Query 121 AAAAGGGTCAAAATGTATGAAGACCAGCAGAAGCTGAAGCGTCTCGAGAAAGTCCAGGTC 180
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 121 AAAAGGGTCAAAATGTATGAAGACCAACAGAAGCTGAAGCGGCTCGAGAAAGTCCAAGTC 180
Query 181 TGGCTTAGACAAGCCGATGTAGCGATCAAAGAAGCAGAAGAAATTTTGATAGCGATGATG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 181 TGGCTTAGACAAGCCGATGTAGCGATCAAAGAAGCAGAAGAAATGTTGATAACGTTGATG 240
Query 241 TCTTCTTCTTCTTCAAATGGATCAAGCATGATGAGTTGTCACAAGATGGACAAGAAGCTT 300
||||| |||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 241 TCTTCCTCTTCTTCTAATGGATCGAGCATGATGAGTTTTCACAAGCTGGACAAGAAGCTT 300
Query 301 TGCAAGAAGCTGAAAGAGGTTAATGAGATAAAGAGTAGAGGAACATTCGATGTGGTGGTT 360
||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 301 TGCAAGAAGCTGAAAGAGGTTCAGGAGATAAAGAGCAGAGGAACATTCGATGTGGTGGTT 360
Query 361 GAGAATAGTGGCATT-G--GTGGATCGATGATGATTTCGACCGTTGATAGAGATGATCAG 417
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GAGAATAGTGGCATTGGTAGTGGATCGATGATGATTTCGAATGTTGATAGAGATGATCAG 420
Query 418 ACGGTTGGATTGGAGGCGGTTTCGGGGCTAGTGTGGCGGTGTATGACGGTGGATAACACC 477
|||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 421 ACGGTTGGGTTGGAGGCGGTTTCCGGGCTAGTGTGGAGGTGTATGACGGTGGATAACACC 480
Query 478 GGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGACGACGGTGTTGACTCAGGTC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGACGACGGTGTTGACTCAGGTA 540
Query 538 AACAACAGGTTGCTTCAGCACAAGTTAAATGGGTTTGACTTTGTGATTTGGGTGTTTGTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACAACAGGTTGCTTCAGCACAAGTTAAATGGGTTTGACTTTGTGATTTGGGTGTTTGTG 600
Query 598 TCCAAGAATCTGAATCTTGAAAGGATTCAGGACACTATCCGAGAGAAGATAGGGTTTCTT 657
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 601 TCCAAGAATGTGAATCTTGAAAAGATTCAGGACACGATCCGAGAGAAGATAGGGTTTCTT 660
Query 658 GATAGGTTGTGGACGAACAAGACAGAGGAAGAGAAAGCCGGTAAGATCTTCGAGATACTT 717
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATAGGTCGTGGATGAGCAAGACAGAGGAAGAGAAAGCCGGTAAGATCTTCGAGATACTT 720
Query 718 AGCAAAAGACGATTCGCTTTGTTCCTTGACGACGTTTGGGAGAAAGTCGATCTAGTGAAA 777
||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 721 AGCAAGAGACGATTCGCTTTATTCCTCGATGACGTTTGGGAGAAAGTCGATCTAGTGAAA 780
Query 778 GCTGGTGTGCCACCGCCGGATGGACAGAAC-GGATCAAAGATCGTGTTTACAACCTGTTC 836
||||||||||| || |||||||||| |||| || || ||||||||||| |||||||||||
Sbjct 781 GCTGGTGTGCCGCCTCCGGATGGACTGAACAGG-TCTAAGATCGTGTTCACAACCTGTTC 839
Query 837 GGACGAGGTTTGTCGGGAAATGGGAGCACAAACTAAGATCAAAATGGAGAAGCTGCCATG 896
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGACGAGGTTTGTCAAGAAATGGGAGCACAAACTAAGATCAAAATGGAGAAGCTGCCATG 899
Query 897 GGAGAGAGCTTGGGACTTGTTTAAGAAGAATGCGGGAGAAGATACAGTGAAGAGCCACCC 956
|||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 900 GGAGAGAGCTTGGGACTTGTTTAAGATGAATGCTGGAGAAGAGATAGTGAAGAGCCACCC 959
Query 957 GGACATAACCAAAGTTGCTCAAGAGGTTGCAGCCAAGTGCGATGGCCTCCCGCTGGCTTT 1016
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 960 GGACATAACCAAAGTTGCTCAAGAGGTTGCAGCCAAGTGTGATGGCCTCCCGCTGGCTCT 1019
Query 1017 GGTCACAATTGGCCGAGCCATGGCCTCTAAGAAAACACCTCAGGAATGGCGTGACGCTTT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGTCACAATTGGCCGAGCCATGGCCTCTAAGAAAACACCTCAGGAATGGCGTGACGCTTT 1079
Query 1077 GTACATCTTGAGTAACTCTCCTCCTAATTTCTCAGGTCCAATTCCATAA 1125
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1080 GTACATCTTGAGTACCTCTCCTCCTAATTTCTCAGGTCCAATTCTATAA 1128
> AT1G52660.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:19613475-19614796
FORWARD LENGTH=1140
Length=1140
Score = 791 bits (428), Expect = 0.0
Identities = 917/1145 (80%), Gaps = 65/1145 (6%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGATTTCAAGAGTATGGTGAC-ACGATGCATCTACGTAGGAAAAGA-GAACG 58
||||||||||||||||||||| |||| || | |||||||||| || || |||| ||| |
Sbjct 1 ATGGGAAAAGATTTCAAGAGTTTGGTTACTA-GATGCATCTATGTTGG-GAAGATGAATG 58
Query 59 ATAACGTGACGAAACTGAAAACCGCGACGGAGGAGCTCAAGGAT-TTACGCAACAATGTG 117
|||| | | ||| ||||||| |||||||||||||||||| ||| || | ||||| |||
Sbjct 59 ATAATGCAAAGAAGCTGAAAATCGCGACGGAGGAGCTCAAAGATCTT-GGAAACAACGTG 117
Query 118 ATGAAAAGGGTCAAAATGTATGAAGACCAGCAGA-AGCTGAAGCGTCTCGAGAAAGTCCA 176
|||||||| ||||| | | ||| || ||||| | || ||||||| || || ||||||||
Sbjct 118 ATGAAAAGAGTCAAGCTTTGTGAGGAGCAGCA-ACAGATGAAGCGGCTTGACAAAGTCCA 176
Query 177 GGTC-TGGCTTAGACAAGCCGA-TGTAGCGATCAAAGAAGC--AGAAGAAATT-TTGATA 231
| ||||| ||||||||||| | | || |||||||| || || | || |||||
Sbjct 177 -AACATGGCTAAGACAAGCCGACACT-GTTATTAAAGAAGCTGAGGAGTATTTCTTGAT- 233
Query 232 GCGATGATGTCTTCTTCTTCTTCAAATGGATCAAGCATGATGAGT--TGTCACAAGATGG 289
| | | ||||| |||||||| ||| | | || || || | ||||||||||
Sbjct 234 --G-T-CT-TCTTCGTCTTCTTCTTCTGG-T-TTG-AT-AT-CGTCGAGCCACAAGATGG 283
Query 290 ACAAGAAGCTTTGCAAGAAGCTGAAAGAGGTTAATGAGATAAAGAGTAGAGGAACATTCG 349
| |||||| ||||||||||||||||||||||| | ||||| ||||| ||||||| || |
Sbjct 284 AGAAGAAGATTTGCAAGAAGCTGAAAGAGGTTCAGGAGATTAAGAGCAGAGGAATGTTTG 343
Query 350 ATGTGGTGGTTGAGA--A-TAGTGGCATTGGTGGA---TC--GATGATGATTTCGACCG- 400
| || || | ||||| | | | |||||||| ||| | | | || || || ||
Sbjct 344 AAGTTGTTGCTGAGAGCACTGGAGGCATTGGAGGAGGGGCGGGCGGCGGA-TT-GA-CGA 400
Query 401 TT---GATAGAGATGATCAGACGGTTGGATTGGAGGCGGTTTCGGGGCTAGTGTGGCGGT 457
|| ||||| ||||| |||||| |||| || |||||||||||||| | || ||| |||
Sbjct 401 TTAAGGATAGCGATGAGCAGACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGT 460
Query 458 GTATGACGGTGGATAACACCGGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGA 517
|| ||||| |||| ||||| || |||||||| || || || |||||||||||||| ||||
Sbjct 461 GTTTGACGATGGAGAACACTGGTATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGA 520
Query 518 CGACGGTGTTGACTCAGGTCAACAACAGGTTGCTTCAGCA-CAAGTTAAATGGGTTTGAC 576
|||| || ||||||||||| || |||||||||||||| || ||| ||||||||||||
Sbjct 521 CGACTGTTTTGACTCAGGTTAATAACAGGTTGCTTCAACAGAAAG-CAAATGGGTTTGAT 579
Query 577 TTTGTGATT-TGGGTGTTTGTGTCCAAGAATCTGAATCTTGA-AAGGATTCAGGACACTA 634
||||| || |||||||||||||||||||| ||||||||| | || |||||| || || |
Sbjct 580 TTTGT-TTTGTGGGTGTTTGTGTCCAAGAACCTGAATCTTCAGAA-GATTCAAGATACGA 637
Query 635 TCCGAGAGAAGATAGGGTTTCTT-GATAGG-TTGTGGACGAACAAGACAGAGGAAGAGAA 692
| | |||||||| ||| ||||| |||||| | ||||||| ||| | |||||||||||
Sbjct 638 TTAGGGAGAAGATTGGG-TTCTTGGATAGGACT-TGGACGAGTAAGTCCGAGGAAGAGAA 695
Query 693 AGCCG-GTAAGATCTTCGAGATACTT-AGCAAAAGACGATTCGCTTTGTTCCTTGACGAC 750
||| | | |||||||| ||||| ||| || || ||||| ||||||||||| ||||| ||
Sbjct 696 AGCTGCG-AAGATCTTTGAGAT-CTTGAGTAAGAGACGGTTCGCTTTGTTTCTTGATGAT 753
Query 751 GTTTGGGAGAAAGTCGATCTAGTGAAAGCTGGTGTGCCACCGCCGGATG-GACAGAA-CG 808
|||||||||||||| ||||| ||||||||||| || || || ||||||| | ||||| ||
Sbjct 754 GTTTGGGAGAAAGTTGATCTTGTGAAAGCTGGAGTTCCGCCACCGGATGCG-CAGAACCG 812
Query 809 GATCAAAGATCGTGTTTACAACCTGTTCGGACGAGGTTTGTCGGGAAATGGGAGCACAAA 868
| || ||||| ||||| || || ||||| || || |||||| ||| ||| | ||||| |
Sbjct 813 G-TCGAAGATAGTGTTCACGACATGTTCCGAAGAAGTTTGTAAGGAGATGAGTGCACAGA 871
Query 869 CTAAGATCAAAATGGAGAAGCTGCCATGGGAGA-GAGCTTGGGACTTGTTTAAGAAGAAT 927
| ||||||||| | ||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 872 CAAAGATCAAAGTAGAGAAATTGGCATGGGA-ACGAGCTTGGGACTTGTTTAAGAAGAAT 930
Query 928 GCGGGAGAAGATAC-AGTGAAGAGCCACCCGGACATAACCAAAGTTGCTCAAGAGGTTGC 986
| ||||||||||| | | ||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 931 GTTGGAGAAGATACTA-TAAAGAGCCACCCAGACATAGCCAAAGTGGCTCAAGAGGTTGC 989
Query 987 AGCCAAGTGCGATGGCCTCCCGCTGGCTTTGGTCACAATTGGCCGAGCCATGGCCTCTAA 1046
||||| |||||| || || || || ||||||||||| |||||||||||||||||||| ||
Sbjct 990 AGCCAGGTGCGACGGTCTTCCTCTAGCTTTGGTCACCATTGGCCGAGCCATGGCCTCCAA 1049
Query 1047 GAAAACACCTCAGGAATGGCGTGACGCTTTGTACATCTTGAGTAACTCTCCTCCTAATTT 1106
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1050 GAAAACCCCTCAAGAATGGCGTGACGCCTTGTACATCTTGAGTAACTCTCCTCCTAATTT 1109
Query 1107 CTCAG 1111
|||||
Sbjct 1110 CTCAG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5