BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904520

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   660    0.0  


> AT3G15760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G52565.1); 
Has 42 Blast hits to 42 proteins in 10 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5337547-5338467 
FORWARD LENGTH=843
Length=843

 Score =  660 bits (357),  Expect = 0.0
 Identities = 392/409 (96%), Gaps = 2/409 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGAGCTGTTCTAATGGTACCGTCGTGATCGCAACCGCCATGGTTTGCTCAAGCACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188  ATGTTGAGCTGTTCTAATGGTACCGTCGTGATCGCAACCGCCATGGTTTGCTCAAGCACC  247

Query  61   GCTCTGTTTCTCGCCATGGCTCGTCAATTCCATGGAAATCATCAAACCTC-TAAGGTTCT  119
            ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||
Sbjct  248  GCTCTGTTTCTCGCCATGGCTCGTCAATTCCATGGAAATCATCAAAA-TCCTAAGGTTCT  306

Query  120  TGATCAGACTCCACGACCCATTCTCCGTTCTTGTTTATCTTCAGAGAAAACGAGGAAACA  179
            ||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct  307  TGATCAGACTCTACGACCCATTCTCCGTTCTTGTCTATCTTCAGAGGAAACGAAGAAACA  366

Query  180  GAGGAAGAGGATAAAGAAAGTGCGGTTCGCGGATAATGTGAAAGACACGAAAGGGAACGG  239
            | |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  367  GGGGAAGAAGATAAAGAAAGTGCGGTTCGCGGATAATGTGAAAGATACGAAAGGTAACGG  426

Query  240  GGAAGAATACCGGAGGAGGGAATTGAACCGGAGAAGCGTACCGGAGCCAGTGACTAAACC  299
            |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct  427  GGAAGAGTACCGGAGGAGGGAATTGAACCGGAAAAGCGTACCGAAGCCAGTGACTAAACC  486

Query  300  GGGGAAGACCGGTTCTATGTGTAGAATCTCTACCATGCCAGCGAACCGGATGGCTCTGTA  359
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  487  GGGAAAGACCGGTTCTATGTGTAGAATCTCTACCATGCCAGCGAACCGGATGGCTCTGTA  546

Query  360  CAATGGGATTCTCAGAGACCGAGATCACAGAGTTCAATGTTCTTATTGA  408
            |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct  547  CAATGGGATTCTTAGAGACCGAGATCACAGAGTTCAATATTCTTATTGA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5