BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904533
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:... 3615 0.0
AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:... 231 2e-59
> AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:5397569-5402652
REVERSE LENGTH=2575
Length=2575
Score = 3615 bits (1957), Expect = 0.0
Identities = 2218/2339 (95%), Gaps = 37/2339 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACGAAGTTCTTAGCTCTGGTTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTA- 59
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 43 ATGGGAACAAAGTTTTTAGCTCTGGGTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTAT 102
Query 60 CGAAGTTTCTTGCCAGGATGAAGGAAGTGGAAGTTTGAGTACTTTAGATCTAATCGAGCA 119
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 103 C-AAGTTTCTTGCCAGGATGAAGGAACTGGAAGTTTGAGTACTTTAGATCTAATTGAGCA 161
Query 120 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATG-A--AGTAGATCAAACTGAGAC 176
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 162 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATGAAGCAGTAGATCAAACTGAGAC 221
Query 177 CAGTGGTCAGAAAAACAGTACA-----AG-TAACAACACTATTTCTTTGTCTTTATCTGA 230
|||||||||||||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 222 CAGTGGTCAGAAAAACAGTACAGTGTCTGATAACAACACTATTTCTTTGTCTCTATCTGA 281
Query 231 AGAA-C--CAGTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 287
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGAACCTGCATTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 341
Query 288 TACTGATGAAGCCGATAAACCTTCGAGTATGTTGGACCATATCGAACTTGAGTTCGAAGC 347
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 342 TACTGATGAAGTCGATAAACCTTCAAGTATGTTGGACCATATTGAACTTGAGTTCGAAGC 401
Query 348 ACATGTCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGATGAGTCTAA 407
|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 402 ACATATCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGAGGAATCTAA 461
Query 408 GGATGATGAAGAAGCTGCTAGGAGACAGAAAATGTTGGAAGCCATTGAGCGAGAGTTTGA 467
||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||
Sbjct 462 AGATGATGAAGAAGCTGCAAGGAGACATAAAATGTTGGAAGCCATTGAACGTGAATTTGA 521
Query 468 AGCTGCTCATGCTGGATTTGAACAACTAAAGATTGATGATTCCACCCAAGGATTAGATGA 527
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 522 AGCTGCTCATGCTGGATTTGAACAACTAAAGACTGATGATTCCGCCCAAGGATTAGATGA 581
Query 528 TGAACAATCTGCAAAGAGACAAAGCATGTTGGATGAGATTGAACGTGACTTTGAAGCTGC 587
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 582 TGAACAATCTGCAAAGAGACAAAGCATGTTGGACGAGATTGAACGTGATTTTGAAGCTGC 641
Query 588 TACAAAAGGTCTTGAACAACTAAAGGCTGATGATATAACCGGAGTCAACGATGAAGAACA 647
||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 642 TACAAAAGGTCTTGAGCAACTAAAGGCTGATGATTTAACTGGAATCAACGATGAAGAACA 701
Query 648 CGCTGCAAAGAGACAAAAGATGCTGGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 707
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 702 CGCTGCAAAGAGACAAAAGATGCTTGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 761
Query 708 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACACTCTGCAAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 762 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACAATCTGCAAA 821
Query 768 GAGACAGAGTATGTTAGATGAGATTGAACGCGAGTTTGAAGCTGCTACAAGTGGTCTTAA 827
|||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 822 GAGACAGAATATGCTAGATGAGATCGAACGGGAGTTTGAAGCTGCTACAAGTGGTCTTAA 881
Query 828 AGAGCTAAAGATTAATGCTTTCACTATCAAAGATGATTCTTCTGAGATAGCTAGATGTTA 887
||||||||||||||||||| |||| |||||||||| | | | ||| | || | |
Sbjct 882 AGAGCTAAAGATTAATGCTCACACTGTCAAAGATGA-T-GT-T--GAT-GATA-A----A 930
Query 888 TGCCTTCTTTACAGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGCGAGTTTGA 947
| | | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 931 -G--AAC---A-AGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGTGAGTTTGA 983
Query 948 AGCCGTTACTGAGAGTTTTAAATAACTTGAAGATATCGCCGATAACAAAGATGAAGGAGA 1007
||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 984 AGCCGTTACCGAGAGTTTTAAACAACTTGAAGATATCGCCGATAACAAAGCTGAAGGAGA 1043
Query 1008 CGACCAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1067
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CGACGAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1103
Query 1068 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCACTGAAGGAGATGATAATGAACA 1127
|||||||||||||||||||||||||||||||||||||| |||||||||||| | || | |
Sbjct 1104 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCAGTGAAGGAGATGACAGTGCAGA 1163
Query 1128 ATCTGCAAAGAGACATAGTATGCTTGAAGCTATAGAACACGAGTTTGAAGCTGCTACAAA 1187
|||||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1164 ATCTGCAAGGAGAAATAGTATGCTTGAAGCTATCGAACGCGAGTTTGAAGCTGCTACAAA 1223
Query 1188 AGGTCTTGAAGAGCTAAAGGCTAATGACTCAACCGGCGACAAGGATGATGATGAACACGT 1247
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1224 AGGTCTTGAAGAGCTAAAGGCTAATGATTCAACCGGCGACAAGGATGATGATGAACACGT 1283
Query 1248 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAGAGG 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1284 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAAAGG 1343
Query 1308 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAATAGAAAGAGTATGTTGGA 1367
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1344 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAAGAGAAACAGTATGTTGGA 1403
Query 1368 GGCAATCGAACGCGAATTTGAAGCTGTTACAAATGCCAAGGCTAATGGAGAAGACTCTGC 1427
||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 1404 AGCATTCGAACGCGAATTTGAAGCTGCTACAAATGCAAAGGCTAATGGAGAAAACTCTGC 1463
Query 1428 AAAGAATCCATCAACCATAAG---TACAGTGCAGAAAACTTCTGGCGGATACAATGCTGG 1484
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1464 AAAGAATCCATCAACCATAAGTACTACAGTGCAGAAATCTTCTGGCGGATACAATGCTGG 1523
Query 1485 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAAGAAAAAGA 1544
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1524 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAGGATAAAGA 1583
Query 1545 TGGCCTTCAGGCAGACACGGATTCTTCGATTAACATAGCAGAGATACTCGCTGAAGAATC 1604
||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1584 TGGTCTTCAGGCAGACACTGATTCTTCGATTAACATAGCGGAGATACTCGCAGAAGAATC 1643
Query 1605 CAAATTACAGGGCTCAGGGACCTCTCCCCTCACCACATCATTGAACAATCTTGTTGATAC 1664
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1644 CAAATTACAGGGCTCAGGGACCTCTCGGCTCACCACATCATTGAACAATCTTGTTGATAC 1703
Query 1665 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1763
Query 1725 TTCTACCACAAGCGAATCAGCAGCTACATCAGAGAGCATAGAGAGCTTGAAGCAAACACT 1784
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1764 TTCTACCACAAGCGAATCAGCGGCTACATCAGAGAGCATAGAGAGCTTAAAGCAAACACT 1823
Query 1785 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1883
Query 1845 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1943
Query 1905 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 2003
Query 1965 TGCTCAGACCCGAGCGAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2024
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 TGCTCAAACCCGAGCCAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2063
Query 2025 CTCGGTATTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2084
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 CTCGGTTTTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2123
Query 2085 CGTGGCGATCAAGAAACTGTTGGCAAAGCTTGAAGCAGAGAAAGTG-AGCGTTGATTCAA 2143
||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 2124 CGTAGCGATCAAGAAACTGTTGGCAAAGCTAGAAGCAGAGAAAGTGGA-CGTTGATTCAA 2182
Query 2144 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCTTCACAGGCTTACG 2203
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2183 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCGTCACAGGCTTACG 2242
Query 2204 AAGAGTACCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2263
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2243 AAGAGTATCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2302
Query 2264 TGGAGACGACAAAAAGAGCAGAACATATTTGGGTCGAGTTTCTTAGTTCACTTAATTGA 2322
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2303 TGGAGACGACAAAGAGAGCAGAACATATTTGGGTTGAGTTTCTTAGTTCACTTAATTGA 2361
> AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:19520728-19525624
FORWARD LENGTH=2577
Length=2577
Score = 231 bits (125), Expect = 2e-59
Identities = 223/269 (83%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 1033 ATGTTGGATGAGATTGAACGTGAATTTGAAGCTGCTACAAATAGTCTTAAGCAACTAAA- 1091
|||||||| || || |||| ||| |||||||||||| || ||||||| || ||||||||
Sbjct 467 ATGTTGGAAGAAATCGAACATGAGTTTGAAGCTGCTTCAGATAGTCTGAAACAACTAAAG 526
Query 1092 CCTTGACGAT-TTCACTGAAGGAGATGAT-AATGAACAATCTGCAAAGAGACATAGTATG 1149
| ||| ||| | || |||||| ||||| || ||||| ||||||||||| || ||| ||
Sbjct 527 AC-TGATGATGTAAAC-GAAGGAAATGATGAA-GAACATTCTGCAAAGAGGCAAAGTTTG 583
Query 1150 CTT-GAAGCTATAGAACACGAGTTTGAAGCTGCTACAAAAGGTCTTGAAGAGCTAAAGGC 1208
|| |||| || |||| |||||||||||||||||||||| |||||| | |||||||
Sbjct 584 -TTGGAAGAGATCGAACGTGAGTTTGAAGCTGCTACAAAAGAACTTGAACAACTAAAGGT 642
Query 1209 TAATGAC-TCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTATG 1266
||||||| || ||||| ||||| ||||| || |||||| | ||||| |||||||| ||||
Sbjct 643 TAATGACTTC-ACCGGGGACAAAGATGACGAAGAACAC-TCTGCAAAGAGAAAAAGTATG 700
Query 1267 CTTGAAGCTATTGAACGCGAGTTTGAAGC 1295
|||||||||||||||||||||||||||||
Sbjct 701 CTTGAAGCTATTGAACGCGAGTTTGAAGC 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5