BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904533 Length=2322 Score E Sequences producing significant alignments: (Bits) Value AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:... 3615 0.0 AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:... 231 2e-59 > AT3G15950.1 | Symbols: NAI2 | DNA topoisomerase-related | chr3:5397569-5402652 REVERSE LENGTH=2575 Length=2575 Score = 3615 bits (1957), Expect = 0.0 Identities = 2218/2339 (95%), Gaps = 37/2339 (2%) Strand=Plus/Plus Query 1 ATGGGAACGAAGTTCTTAGCTCTGGTTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTA- 59 |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 43 ATGGGAACAAAGTTTTTAGCTCTGGGTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTAT 102 Query 60 CGAAGTTTCTTGCCAGGATGAAGGAAGTGGAAGTTTGAGTACTTTAGATCTAATCGAGCA 119 | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 103 C-AAGTTTCTTGCCAGGATGAAGGAACTGGAAGTTTGAGTACTTTAGATCTAATTGAGCA 161 Query 120 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATG-A--AGTAGATCAAACTGAGAC 176 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 162 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATGAAGCAGTAGATCAAACTGAGAC 221 Query 177 CAGTGGTCAGAAAAACAGTACA-----AG-TAACAACACTATTTCTTTGTCTTTATCTGA 230 |||||||||||||||||||||| | |||||||||||||||||||||| ||||||| Sbjct 222 CAGTGGTCAGAAAAACAGTACAGTGTCTGATAACAACACTATTTCTTTGTCTCTATCTGA 281 Query 231 AGAA-C--CAGTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 287 |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 AGAACCTGCATTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 341 Query 288 TACTGATGAAGCCGATAAACCTTCGAGTATGTTGGACCATATCGAACTTGAGTTCGAAGC 347 ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 342 TACTGATGAAGTCGATAAACCTTCAAGTATGTTGGACCATATTGAACTTGAGTTCGAAGC 401 Query 348 ACATGTCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGATGAGTCTAA 407 |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 402 ACATATCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGAGGAATCTAA 461 Query 408 GGATGATGAAGAAGCTGCTAGGAGACAGAAAATGTTGGAAGCCATTGAGCGAGAGTTTGA 467 ||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||| Sbjct 462 AGATGATGAAGAAGCTGCAAGGAGACATAAAATGTTGGAAGCCATTGAACGTGAATTTGA 521 Query 468 AGCTGCTCATGCTGGATTTGAACAACTAAAGATTGATGATTCCACCCAAGGATTAGATGA 527 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 522 AGCTGCTCATGCTGGATTTGAACAACTAAAGACTGATGATTCCGCCCAAGGATTAGATGA 581 Query 528 TGAACAATCTGCAAAGAGACAAAGCATGTTGGATGAGATTGAACGTGACTTTGAAGCTGC 587 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 582 TGAACAATCTGCAAAGAGACAAAGCATGTTGGACGAGATTGAACGTGATTTTGAAGCTGC 641 Query 588 TACAAAAGGTCTTGAACAACTAAAGGCTGATGATATAACCGGAGTCAACGATGAAGAACA 647 ||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||| Sbjct 642 TACAAAAGGTCTTGAGCAACTAAAGGCTGATGATTTAACTGGAATCAACGATGAAGAACA 701 Query 648 CGCTGCAAAGAGACAAAAGATGCTGGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 707 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 702 CGCTGCAAAGAGACAAAAGATGCTTGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 761 Query 708 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACACTCTGCAAA 767 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 762 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACAATCTGCAAA 821 Query 768 GAGACAGAGTATGTTAGATGAGATTGAACGCGAGTTTGAAGCTGCTACAAGTGGTCTTAA 827 |||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 822 GAGACAGAATATGCTAGATGAGATCGAACGGGAGTTTGAAGCTGCTACAAGTGGTCTTAA 881 Query 828 AGAGCTAAAGATTAATGCTTTCACTATCAAAGATGATTCTTCTGAGATAGCTAGATGTTA 887 ||||||||||||||||||| |||| |||||||||| | | | ||| | || | | Sbjct 882 AGAGCTAAAGATTAATGCTCACACTGTCAAAGATGA-T-GT-T--GAT-GATA-A----A 930 Query 888 TGCCTTCTTTACAGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGCGAGTTTGA 947 | | | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 931 -G--AAC---A-AGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGTGAGTTTGA 983 Query 948 AGCCGTTACTGAGAGTTTTAAATAACTTGAAGATATCGCCGATAACAAAGATGAAGGAGA 1007 ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 984 AGCCGTTACCGAGAGTTTTAAACAACTTGAAGATATCGCCGATAACAAAGCTGAAGGAGA 1043 Query 1008 CGACCAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1067 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 CGACGAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1103 Query 1068 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCACTGAAGGAGATGATAATGAACA 1127 |||||||||||||||||||||||||||||||||||||| |||||||||||| | || | | Sbjct 1104 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCAGTGAAGGAGATGACAGTGCAGA 1163 Query 1128 ATCTGCAAAGAGACATAGTATGCTTGAAGCTATAGAACACGAGTTTGAAGCTGCTACAAA 1187 |||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1164 ATCTGCAAGGAGAAATAGTATGCTTGAAGCTATCGAACGCGAGTTTGAAGCTGCTACAAA 1223 Query 1188 AGGTCTTGAAGAGCTAAAGGCTAATGACTCAACCGGCGACAAGGATGATGATGAACACGT 1247 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1224 AGGTCTTGAAGAGCTAAAGGCTAATGATTCAACCGGCGACAAGGATGATGATGAACACGT 1283 Query 1248 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAGAGG 1307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1284 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAAAGG 1343 Query 1308 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAATAGAAAGAGTATGTTGGA 1367 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1344 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAAGAGAAACAGTATGTTGGA 1403 Query 1368 GGCAATCGAACGCGAATTTGAAGCTGTTACAAATGCCAAGGCTAATGGAGAAGACTCTGC 1427 ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| Sbjct 1404 AGCATTCGAACGCGAATTTGAAGCTGCTACAAATGCAAAGGCTAATGGAGAAAACTCTGC 1463 Query 1428 AAAGAATCCATCAACCATAAG---TACAGTGCAGAAAACTTCTGGCGGATACAATGCTGG 1484 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1464 AAAGAATCCATCAACCATAAGTACTACAGTGCAGAAATCTTCTGGCGGATACAATGCTGG 1523 Query 1485 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAAGAAAAAGA 1544 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1524 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAGGATAAAGA 1583 Query 1545 TGGCCTTCAGGCAGACACGGATTCTTCGATTAACATAGCAGAGATACTCGCTGAAGAATC 1604 ||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 1584 TGGTCTTCAGGCAGACACTGATTCTTCGATTAACATAGCGGAGATACTCGCAGAAGAATC 1643 Query 1605 CAAATTACAGGGCTCAGGGACCTCTCCCCTCACCACATCATTGAACAATCTTGTTGATAC 1664 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1644 CAAATTACAGGGCTCAGGGACCTCTCGGCTCACCACATCATTGAACAATCTTGTTGATAC 1703 Query 1665 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1763 Query 1725 TTCTACCACAAGCGAATCAGCAGCTACATCAGAGAGCATAGAGAGCTTGAAGCAAACACT 1784 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1764 TTCTACCACAAGCGAATCAGCGGCTACATCAGAGAGCATAGAGAGCTTAAAGCAAACACT 1823 Query 1785 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1824 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1883 Query 1845 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1884 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1943 Query 1905 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 1964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1944 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 2003 Query 1965 TGCTCAGACCCGAGCGAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2024 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2004 TGCTCAAACCCGAGCCAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2063 Query 2025 CTCGGTATTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2084 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064 CTCGGTTTTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2123 Query 2085 CGTGGCGATCAAGAAACTGTTGGCAAAGCTTGAAGCAGAGAAAGTG-AGCGTTGATTCAA 2143 ||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| Sbjct 2124 CGTAGCGATCAAGAAACTGTTGGCAAAGCTAGAAGCAGAGAAAGTGGA-CGTTGATTCAA 2182 Query 2144 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCTTCACAGGCTTACG 2203 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2183 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCGTCACAGGCTTACG 2242 Query 2204 AAGAGTACCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2263 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2243 AAGAGTATCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2302 Query 2264 TGGAGACGACAAAAAGAGCAGAACATATTTGGGTCGAGTTTCTTAGTTCACTTAATTGA 2322 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2303 TGGAGACGACAAAGAGAGCAGAACATATTTGGGTTGAGTTTCTTAGTTCACTTAATTGA 2361 > AT1G52410.2 | Symbols: TSA1 | TSK-associating protein 1 | chr1:19520728-19525624 FORWARD LENGTH=2577 Length=2577 Score = 231 bits (125), Expect = 2e-59 Identities = 223/269 (83%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 1033 ATGTTGGATGAGATTGAACGTGAATTTGAAGCTGCTACAAATAGTCTTAAGCAACTAAA- 1091 |||||||| || || |||| ||| |||||||||||| || ||||||| || |||||||| Sbjct 467 ATGTTGGAAGAAATCGAACATGAGTTTGAAGCTGCTTCAGATAGTCTGAAACAACTAAAG 526 Query 1092 CCTTGACGAT-TTCACTGAAGGAGATGAT-AATGAACAATCTGCAAAGAGACATAGTATG 1149 | ||| ||| | || |||||| ||||| || ||||| ||||||||||| || ||| || Sbjct 527 AC-TGATGATGTAAAC-GAAGGAAATGATGAA-GAACATTCTGCAAAGAGGCAAAGTTTG 583 Query 1150 CTT-GAAGCTATAGAACACGAGTTTGAAGCTGCTACAAAAGGTCTTGAAGAGCTAAAGGC 1208 || |||| || |||| |||||||||||||||||||||| |||||| | ||||||| Sbjct 584 -TTGGAAGAGATCGAACGTGAGTTTGAAGCTGCTACAAAAGAACTTGAACAACTAAAGGT 642 Query 1209 TAATGAC-TCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTATG 1266 ||||||| || ||||| ||||| ||||| || |||||| | ||||| |||||||| |||| Sbjct 643 TAATGACTTC-ACCGGGGACAAAGATGACGAAGAACAC-TCTGCAAAGAGAAAAAGTATG 700 Query 1267 CTTGAAGCTATTGAACGCGAGTTTGAAGC 1295 ||||||||||||||||||||||||||||| Sbjct 701 CTTGAAGCTATTGAACGCGAGTTTGAAGC 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115260451320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5