BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904555
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16160.1 | Symbols: | Tesmin/TSO1-like CXC domain-containin... 756 0.0
> AT3G16160.1 | Symbols: | Tesmin/TSO1-like CXC domain-containing
protein | chr3:5473366-5475090 REVERSE LENGTH=1107
Length=1107
Score = 756 bits (409), Expect = 0.0
Identities = 519/572 (91%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 ATGACAGGTAACGCAGATTCCGGCAAAATCGCGACAGAGAAAGACCAAAGGAAGCTCGTT 60
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACAGGAAACGCAGATTCCGGCAAAATCGCGACAGAGAAAGACCCTAGGAAGCTCGTT 60
Query 61 TTCACCAAATTGGAGTTATCTCCCGTCTTCCTTGAGTCGCCTGTTAAAGAACTTCCTCCT 120
||||||||||||||| ||||||||||||||| || || ||||||||||||||||||| |
Sbjct 61 TTCACCAAATTGGAGGTATCTCCCGTCTTCCGAGAATCTCCTGTTAAAGAACTTCCTCTT 120
Query 121 TTTCCTCCGATTTCTCGAAAGCATTCAGAAACAAAGGATACGACAGATCAGGAAGGCATT 180
|||||||||||||||||| ||||||||||| ||||||||| ||||||| | |||||||||
Sbjct 121 TTTCCTCCGATTTCTCGAGAGCATTCAGAAGCAAAGGATAAGACAGATGAAGAAGGCATT 180
Query 181 ACTTCGAGG-AA-AC----GATGTCGATGCAAACAATCCAAATGTTTAAAGTTGTACTGT 234
||||||||| || || ||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 ACTTCGAGGAAACACAAAGGATGTCGATGCAAGCAGTCCAAATGTTTAAAGTTGTACTGT 240
Query 235 GACTGTTTTGCATCAGGAGTGTTATGTACCGACTGTGATTGTGTTGATTGTCATAACAAC 294
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GACTGTTTTGCATCAGGAGTGGTATGTACAGACTGTGATTGTGTTGATTGTCATAACAAC 300
Query 295 TCTGACAACTATGATGCCAGAGATGCAGCTGTGCTGAATGTACTAGGTCGCAACCCAAAT 354
||||| || | |||||| ||||| |||||| || ||||||||||||||||||||||||||
Sbjct 301 TCTGAGAAATGTGATGCTAGAGAAGCAGCTATGGTGAATGTACTAGGTCGCAACCCAAAT 360
Query 355 GCTTTCAATGAGAAACTTTTTAGC-AGCATAAATGACAAGCAGTGTAAGGCTGCACCTGA 413
|| |||| ||| ||| ||||| ||| ||| ||| || ||||||||||||||||||||
Sbjct 361 GCCTTCAGTGA-AAAGGCTTTAGGTAGCCTAACTGATAATCAGTGTAAGGCTGCACCTGA 419
Query 414 TACTAGACCTGGACTGCTTTCGAGAGGCTGTAAATGCAAAAGAACCAAGTGCTTGAAGAA 473
||||| |||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||
Sbjct 420 TACTAAACCTGGACTGCTTTCGAGAGGCTGCAAATGTAAAAGAACCAGGTGTTTGAAGAA 479
Query 474 GTACTGTGAATGCTTTCAGGCTAATGTTTTGTGCTCAGACAACTGTAAATGCATCAACTG 533
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 480 GTACTGTGAGTGCTTTCAGGCTAATCTTCTGTGCTCAGACAACTGTAAATGCATCAACTG 539
Query 534 CAAGAATGTCAGTGAAGCGTTCCAGCCTTCTG 565
||||||||| |||||||||||||||||| |||
Sbjct 540 CAAGAATGTTAGTGAAGCGTTCCAGCCTCCTG 571
Score = 619 bits (335), Expect = 2e-176
Identities = 481/549 (88%), Gaps = 19/549 (3%)
Strand=Plus/Plus
Query 713 CTCCTGGATTTTCTGCTCACAACTCCCCACAGGTATACCGGAGAAGAAGACACCGAGAGC 772
|||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||
Sbjct 566 CTCCTGCATTTTCTGCTCACAATTCCCCACAAGTATACCGGAGGAGAAGAGACCGAGAGC 625
Query 773 TACCTGAGTGGAATTCTTGTCCAGCTCCATTATTTTCGATACCTGACAATTCCATTCAAA 832
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 626 TAACTGAGTGGAATTCTTGTCCAGCTCCGTTATTTTCGATACCTGACAATTCCATTCAAA 685
Query 833 ATACTCTGGGTTCCCCTATGACTAGCTCTCCTAAGCTTCCTTACAGAAAGAAAAAGCCCC 892
|| ||||||||||||||||| || |||||||||| ||||||||||||||||||| | |||
Sbjct 686 ATGCTCTGGGTTCCCCTATGTCTTGCTCTCCTAAACTTCCTTACAGAAAGAAAAGGTCCC 745
Query 893 -CATTGGGATATGCTTCCACAGTTGTTCCAGATTTAGGAGATATATGCTCACTTCTC-TT 950
||| |||||| | || ||| || |||| || || |||||| |||||||||||||| ||
Sbjct 746 TCAT-GGGATACACCTCTACACTTCTTCCGGACTTGGGAGATTTATGCTCACTTCTCGTT 804
Query 951 AGCAGCATCTGAAACTGCTACAGCCAA-TGCAGAAGACCAGAACAGGATATGTATAAAGC 1009
||||| || ||| |||||||| | || |||||| |||||||||||||||| || |||||
Sbjct 805 -GCAGCGTCAGAATCTGCTACAAC-AACTGCAGAGGACCAGAACAGGATATTTACAAAGC 862
Query 1010 CTGATGATAAGGTAGACAACGTGTACACTGAGGTATTGAGTGAGTCTGAAAG-CGGTAAT 1068
|||||||||||| || || || | ||| | ||||||||||| || || ||||
Sbjct 863 CTGATGATAAGGAAGCCAT--TG-AG-CTGTC--A---AGTGAGTCTGAGAGTCG-TAAT 912
Query 1069 GTGGAAGAAGAAACACAATC-CTTTCGAAGATTGATCGAACTGATAGATGCTCAATATAA 1127
||||||||||||| |||||| | | |||||||||||||||||||||||| |||||| ||
Sbjct 913 GTGGAAGAAGAAATACAATCACGTG-GAAGATTGATCGAACTGATAGATGTTCAATACAA 971
Query 1128 TGGAGAAGAGCATTCCAAATGTAAGACCGAGACAAGTGTCCATGAAACAGATATATACAT 1187
|||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 972 TGGAGAAGAGGATTCCCAATGTAAGACCAAGACAAGTGTCAATGAAACAGATATATACAT 1031
Query 1188 GGAGCAGGAAATGGCAGTTCTTGAAACTTTCAGAGACTGTCTCCAAATGTTCATCAAATC 1247
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1032 GGAGCAGGAAAGGGCAGTGCTTGAAACTTTCAGAGACTGTCTCCAAAAGTTCATCAAATC 1091
Query 1248 GAGACTGGA 1256
|||||||||
Sbjct 1092 GAGACTGGA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5