BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904559
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16190.1 | Symbols: | Isochorismatase family protein | chr3... 815 0.0
> AT3G16190.1 | Symbols: | Isochorismatase family protein | chr3:5489701-5491248
REVERSE LENGTH=826
Length=826
Score = 815 bits (441), Expect = 0.0
Identities = 543/593 (92%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAGATGGAGGAACACGGCTCTACTCGTTATCGATATGCAGAAGGATTTCATA 60
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 54 ATGGCCGAGAGATGGAGGAACACGGCTCTACTCGTCATCGACATGCAGAACGATTTCATA 113
Query 61 GAGGAAAGTTCAATGATTCGAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATTAGA 120
|||||| || | ||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 114 GAGGAAGGTGCTGTGACGCAAGTGAAAGGAGGAAAATCTATAGTTCCTAATGTTATCAGA 173
Query 121 GTCGTTGAACTCGCGAGGCAGCATGGTATTCTCGTAATTTGGGTTGTTAGGGAACATGAT 180
||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 174 GTCGTCGAACTCGCGAGGCAGCGTGGTATTCTCGTAATTTGGGTTGTTCGAGAACATGAT 233
Query 181 CCTCGAGGAAGAGATGTTGAGA-TATTCAGGCGTCATCACTACAATTCTGATCAAGTCGG 239
| || ||||||||||||||| | |||||||||| ||| |||||| |||||| |||||||
Sbjct 234 CGTCAAGGAAGAGATGTTGA-ATTATTCAGGCGCCATAACTACAGTTCTGAGAAAGTCGG 292
Query 240 ACCAACTGTTAAAGGCACTGTAGGAGCAGAATTAGTTGATGGATTGATCATCAAGGAAGA 299
||| | |||||||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 293 GCCAGTTATTAAAGGCACCGTAGGAGCAGAATTGGTTGATGGATTGATGATCAACGAAGA 352
Query 300 AGAAGACTATAAGATTGTGAAAACTCGTTTTAGCGCCTTT-TTTAGTACCAATCTTCATT 358
||| |||||||||||||||||||||||||| || | |||| |||||||||||||||||||
Sbjct 353 AGATGACTATAAGATTGTGAAAACTCGTTTCAGTG-CTTTCTTTAGTACCAATCTTCATT 411
Query 359 CCTTCTTGCAAACTTCTGGGGTTACCAATTTAGTCATTGCTGGTGTTCAAACGCCGAATT 418
|||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 412 CCTTCTTGCAAACTTCAGGGGTTACCAAGTTAGTGATTGCTGGTGTGCAAACGCCGAACT 471
Query 419 GTATCCGGCAAACGGTTTTTGATGCAGTGGAGCTGGATTATCCAAATGTGACAGTTATTA 478
|||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 472 GTATCCGGCAAACGGTGTTTGATGCAGTGGCGCTGGATTATCCCAATGTGACTGTTATTA 531
Query 479 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAGATGCCACAGCTGCTGCAACACCAGAGATCCATACTGCGAATATTCTTGACATGAAGA 591
Query 539 ATATAGGAGTCAAGACTCCTACATTACATGAGTGGTCCGAAGAATTTGCTTGA 591
|||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 592 ATATTGGAGTCAAGACTCCTACATTACACGAGTGGTCCGAAGAACTTGCTTGA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5