BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904577
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16300.1 | Symbols: | Uncharacterised protein family (UPF04... 915 0.0
> AT3G16300.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:5525491-5526207 REVERSE LENGTH=639
Length=639
Score = 915 bits (495), Expect = 0.0
Identities = 595/643 (93%), Gaps = 8/643 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACTCGACCGTTGTGATTGAAGAAACGAAGCTT 60
|||||||||||||||||||||||||||||| ||||||||| || || |||| ||||||||
Sbjct 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACCCGACCGTTGCGAGTGCAGAAGCGAAGCTT 60
Query 61 GATATCCGCGACGTGGTCAACACAACCACCACTTACGGCGAGGATAACGGTCACGGAGGC 120
|||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||| |||
Sbjct 61 GATATCCGCGACGTGGTCAACACAGCCATCACTTACGGCGAAGATAACCGTCACGGCGGC 120
Query 121 GGGAGACGTAATGACGTGGCAATGGTTGTGCTAAGAGCCATGTGCATGGCCGTATCCGCT 180
|||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 121 GGGAAACGCAATGACGTGGCCATGTTTGTGCTAAGAGCCATGTGCATGGCCGTATCAACG 180
Query 181 GTGGCTGTCT-CGTTGATGGTGACAGCCCGTGAGACTAGCATGACCACTCTCTACGGTTT 239
|||||||| | |||| ||||| ||||| || ||||||||||||||||||||||| || ||
Sbjct 181 GTGGCTGT-TACGTTAATGGTAACAGCACGCGAGACTAGCATGACCACTCTCTATGGCTT 239
Query 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTGGTGGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTTGTGGT 299
Query 300 TTCATCGGCGACGGTTCTTTACTCGTTGATCCAACTAATTATAAGTGGAACAAGACTAAT 359
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 TTCATCGGCAACGGTTCTTTACTCGTTGATTCAACTGATTATAAGTGGAACAAGACTAAT 359
Query 360 GAGAAAATTC-CCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAAA-TCTCCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418
Query 419 AGATAATAGGATACGCAATGGTGAGTGGTGGATCAGCGGCTTTAGGAGTGACGAATATGA 478
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 419 AGATAATAGGATACGCAATGGTGAGTGGAGGATCTGCAGCTTTAGGAGTGACGAATATGA 478
Query 479 ACAGAACAGGAATCAGACACATGCCTCTTCCAAATTTCTGCAAATCTCTTGGTTTCTTCT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 ACAGAACAGGAATCAGACACATGCCTCTTCCTAATTTCTGCAAATCTCTTGGTTTCTTCT 538
Query 539 GTGACCATCTCGCTGTCTCCGTCGTTTTTGCTTTGAT-CGCGTTTCTCCTTCTCGCCGCT 597
||||||||||||||| |||| |||| || || || || |||||||||||| |||||||||
Sbjct 539 GTGACCATCTCGCTGGCTCCATCGTCTTCGCCTT-ATTCGCGTTTCTCCTCCTCGCCGCT 597
Query 598 TCTTCTTTTCTCGACGTTCTC-AGTCTCTCACGCGACCGCTAA 639
||||| |||||||||||||| | |||||||||| ||||||||
Sbjct 598 TCTTCACTTCTCGACGTTCTCCA-TCTCTCACGCCACCGCTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5