BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904610
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04350.1 | Symbols: | Plant protein of unknown function (DU... 276 3e-73
AT3G17590.2 | Symbols: BSH | transcription regulatory protein S... 187 2e-46
AT3G17340.2 | Symbols: | ARM repeat superfamily protein | chr3... 182 8e-45
> AT3G04350.1 | Symbols: | Plant protein of unknown function (DUF946)
| chr3:1153727-1156776 REVERSE LENGTH=2256
Length=2256
Score = 276 bits (149), Expect = 3e-73
Identities = 209/236 (89%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 786 AGAGCTGTGCTGGTTAGAGCATATGAGAGAATGGGGTCCGACCATTGCTTATGATTCAGC 845
||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 1798 AGAGCCGTGCTGGTTACAGTATATGAGAGAATGGGGTCCGACCATTGCATATGATTCAGG 1857
Query 846 GTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGCTTGTTGGGTT-T-T-------- 895
||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 1858 GTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGGTTGTTAGGTTCTCTATTGAGAA 1917
Query 896 CATTGTTGATTTGTTTCTCATTGATCTTTATGGAGAAGAAGGTCACACGGGGCCAAAGGA 955
||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 1918 CATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAAGGTCCCACAGGGCCAAAGGA 1977
Query 956 GAAGGATAACTGGGAAGGAGATGAGTTGTGCTGAAAGA-GA-AAGCCTCTGTGTGA 1009
||| ||||||||||||||||||||| |||||||||||| || || ||||| |||||
Sbjct 1978 GAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAAGAAGACAAACCTCTTTGTGA 2033
> AT3G17590.2 | Symbols: BSH | transcription regulatory protein
SNF5, putative (BSH) | chr3:6017212-6019666 REVERSE LENGTH=905
Length=905
Score = 187 bits (101), Expect = 2e-46
Identities = 115/122 (94%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 136 CCTGCTGCTGCCTTTGCGATAAGGGAACAACTTTACCAGATTGCAATTCCAATTGTGGCT 195
||||||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||
Sbjct 520 CCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGAGATTGCAATTCAAAGTGTGGCT 579
Query 196 TCAGCTAGGGAGAGTAGATTAAGTAAAAAAGGCCGCAGAGGATCTGATCATGGTTCAGCG 255
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 580 TCAGCTAGGGAGAGTAGATTAAGCAAGAAAGGCCGCAGAGGATCTGATCATGGTTCAGCG 639
Query 256 AG 257
||
Sbjct 640 AG 641
> AT3G17340.2 | Symbols: | ARM repeat superfamily protein | chr3:5920478-5926928
REVERSE LENGTH=3499
Length=3499
Score = 182 bits (98), Expect = 8e-45
Identities = 108/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 300 GTACTTCCTGCAACCAAAACTTGCAAAGGAGCCAGTACCACAACAGCTGGAGAGTATCAC 359
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 583 GTACTTCCTGCAACCAAAACTTGCAAAGGAGCCAGTGCCACAACAGCTGGAGAGTATCGC 642
Query 360 GAAAGAAATTCTAGTACCCTTGGTGTCAGTATTACATCGTCTCGTCGACAAGG 412
|| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 643 GAGAGAAATTCTAGTACCCTTGGTGTCAGTATTACATCGTCTCATTGACAAGG 695
Score = 180 bits (97), Expect = 3e-44
Identities = 108/113 (96%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 412 GTGAAGTCCCATATGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCGAGATATG 471
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 GTGAAGTCCCATATGCCATCTGCTTTGTCACCTCTGCTCGGTTCCTTCTGTCAAGATATG 832
Query 472 ATCAGAATTCTGGACTCCTTGAGCTTTGACTGGAGTGTTATTC-TTCTGATGG 523
||||||||||||||||||||||| |||||||||||||| | || |||||||||
Sbjct 833 ATCAGAATTCTGGACTCCTTGAGTTTTGACTGGAGTGTAACTCCTTCTGATGG 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5