BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904619

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16670.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   684    0.0  


> AT3G16670.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr3:5681419-5682331 FORWARD LENGTH=766
Length=766

 Score =  684 bits (370),  Expect = 0.0
 Identities = 436/468 (93%), Gaps = 3/468 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAATTATCAAGAACAAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  60
            |||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   ATGGCAGTTATCAAG---AAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  138

Query  61   GTGTCTCCAATGGCTAACGCTCAGATTGGTCTTGGTGGTATCAATGTCCCCATTATCAGT  120
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  139  GTGTCTCCAATGGCTAACGCTCAGAGTGGTCTTGGTGGTATCAATGTCCCCATTATCAAT  198

Query  121  GGGGTTCTCTTTTGCACTATCAATGGCGCCCCTCTCAATGGCACTTCTGCCCCAGCTTTC  180
            ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||
Sbjct  199  GGGGTTCTCTTTTGCACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTC  258

Query  181  GCTAATGCGGTCGTCCAGCTCCAGTGTGGAAGCCAAAACACAGTCGTAGCAGAGACGATT  240
            ||||||||||||||||||||||||||||||| || ||||| |||||||||||| || |||
Sbjct  259  GCTAATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAACAATT  318

Query  241  ACGAGCATTACCGGATTATTCACGTTTTCTACAAACGGAATTCAAATATCGCTTCCCACA  300
            |||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  319  ACGAACATTGCCGGATTATTCACGTTTTCTACAAACGGAATTCAGATATCCCTTCCCACA  378

Query  301  CTCCTCAACGACTGTCGTATCGTTGTCCCAACCCCTCGCTCCAGCTGCAACTCCACGCTC  360
            ||||||||||| ||||||||||| |||||||||||||||||||||||| || |||| |||
Sbjct  379  CTCCTCAACGATTGTCGTATCGTCGTCCCAACCCCTCGCTCCAGCTGCGACGCCACCCTC  438

Query  361  CCTTCCACCGGACAACTCATCTCCCAGTTAAAAATCGTCGGCAGCCTCATCTCCGGCCTC  420
            ||||||||||||||||| ||||||||||||||  ||||||||||  || |||||||||||
Sbjct  439  CCTTCCACCGGACAACTGATCTCCCAGTTAAATCTCGTCGGCAGTATCGTCTCCGGCCTC  498

Query  421  CTCAACCTAGTCGCTATCCTCCCAACCGGTTTTATCCCCACAGTCTAA  468
            |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  499  CTCAACATAGTCGCTATCCTCCCAACCGGTTTTATCCCCACAATCTAA  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5