BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904629
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 | chr3:572324... 2913 0.0
> AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723249-5727620
REVERSE LENGTH=2194
Length=2194
Score = 2913 bits (1577), Expect = 0.0
Identities = 1775/1868 (95%), Gaps = 23/1868 (1%)
Strand=Plus/Plus
Query 39 ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGaacaacaacaacaaca 98
|||||||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 147 ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAG------AACAACAACA 200
Query 99 acaTGGGAAACCTAAATTTGTTAAACCCAAATCT-----T--T----TG--GAG-AC-AG 143
||||| |||||||||||||| ||||||||||||| | | | ||| || |
Sbjct 201 ACATGTGAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAA 260
Query 144 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCTATCGAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAA 320
Query 204 GAGGAAGCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCG 263
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 321 GAGAAAGCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACG 380
Query 264 TCGTGATATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 323
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 381 CCGTAATATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAA 440
Query 324 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGT 383
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 441 GGGGAAGGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGT 500
Query 384 GAAGTTTTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCT 443
||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||
Sbjct 501 GAAGTTTTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCT 560
Query 444 TAACCTTGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATC 503
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 TAACCTTGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATC 620
Query 504 TAAGCAGCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCG 563
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 621 TAAGCAGCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCG 680
Query 564 TCACCTCTTCGGATCTGTTGTTGTGGAGCATGCATACCGTCTGGGAACTGCAGCACAAAA 623
||| | ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 681 TCATGTGTTCGGATCTCTTGTTGTGGAGCATGCATACCATCTGGGAAGTGCAGCACAAAA 740
Query 624 ACAAGAACTCCTTGCAGAATTGTATTCTACAGAGCTTCAGTTATTCAAGGGCTTGACCTC 683
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 741 ACAAGAACTCCTTGCAGAATTGTATTCTACTGAGCTTCAGTTATTCAAGGGCTTGACCAC 800
Query 684 ATCTACCGATAAAACGGTGGTAGACATCATCGCTAAGCTAGGACTGCAAAAAGGCGCTGT 743
||||| ||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 801 ATCTAACGAAAAAACGGTGGTGGACATCATTGCTAAGCTGGGACTGCAAAAAGGCGCTGT 860
Query 744 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TAACCGACACATGACTGCCATTATCCAACCGATACTTGAGAAGGGAATTGTCGACCACAC 920
Query 804 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TATCACACACAAATTGCTGATTGAATACCTGACAATAGCTGATAAGACTTCTGCTGCAGA 980
Query 864 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGTGCTTCAGCTACTGACAGGCTCCCTTCTTTTGCGTATGGTTCATACCCGTGATGGTTC 1040
Query 924 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCCAAGGAGAGAAAGAAGATTATCAA 983
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1041 TAGGCTTGCCATGCTTTCTATCAAACATGGAAGCGCTAAGGAGAGAAAGAAGATTATCAA 1100
Query 984 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTTATCAGTTTGGAAGTATGGTGCTTGC 1043
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1101 AGCAATGAAAGAGCATGTTAAAAAGATGGCTTTTGATCAGTTTGGAAGTATGGTGCTTGC 1160
Query 1044 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 ATGTATTTTTTCAATAGTTGATGACACAAAGCTCGTGACCAAGATAATTGTTCGTGAGCT 1220
Query 1104 TGAGGCCAGCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1163
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGAGGCCACCCTAAAGGATCTTGTTATGGACAAGAATGGTAGGAGACCGCTATTGCAGCT 1280
Query 1164 ACTGCATCCAAATTCTTCACGTTATTTGAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1223
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1281 ACTGCATCCAAATTCCTCACGTTATTTAAGCCATGATGATTTGGCCGCTCTTGATCTTTC 1340
Query 1224 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TGTTCCATCACTCTGCTCAATGGATAAGTCAGAGACATCCTCTAAAACAAAGGACACAGA 1400
Query 1284 TGGTAACGAA-TCTGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGTTGAACATA 1342
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1401 TGGTAACGAAAT-TGGTGAGGAGACGAAGGATGAACAAGAAGATACAGTAGCTGAACATT 1459
Query 1343 CAGATCATGAAGAAAACGTCACAGCTATGGGAGGTAAAAAAGATCCCCTTGTGAGAAGAC 1402
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1460 CTGATCATGAAGAAAACGTCACAGCTATGGGTGGTAAAAAAGACCCCCTTGTGAGAAGAC 1519
Query 1403 AGGAGTTGCTCGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGCGTGGAGAATG 1462
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1520 AGGAGTTGCTTGTCAACAGTGGCCTTGCTGAGAGGCTTATTGATGTGTGTGTGGAGAACG 1579
Query 1463 CCGAGGAATTCCTCAAGTCAAACTTTGGCAAAGAGGTCATGTATGAGGTTGCAATTGGAG 1522
|||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1580 CCGAGGAATTCCTCCAGTCAAAATTTGGCAATGAGGTCATGTATGAGGTTGCAATCGGAG 1639
Query 1523 GCTCTGATGGTATTCTTTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1582
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 GCTCTGATGGTATTCTCTGCCCATCTCTGAGCGAGAAGCTGTGTGAGCTGTACGAAGCTA 1699
Query 1583 TTAGCTCTGTAGCAGCAAAACCGAAACCCCAAGAATCTGGGAAGGATTCAGAGCACATCC 1642
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1700 TTAGCTCTGTAGCAGCAGAACCGAAACCCCAAGAATCTGAGAAGGATTCAGAACACATCC 1759
Query 1643 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGGATTGCCCTGGTTTTG 1702
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1760 TGGAAAACTTTCACTCAAGTCGGACCATAAGAAGGCTTGTCTTGAATCGCCCTGGTTTCG 1819
Query 1703 CCTCCACTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCTCAAGGACACT 1762
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1820 CGTCCATTCTCTTTAAGAAGGCCTTGTCTGGAAAATGTCGGTCGTGGGCACAAGGACACT 1879
Query 1763 GTTCAAAGATACTATCTGCTTTCCTAGAGACTGAAGATTTTCAAGTTCGTGAGATGGCTA 1822
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1880 GTTCAAAGATACTATCTGCTTTCGTAGAGACTGAAGATGTTCAAGTTCGTGAGATGGCTA 1939
Query 1823 AAACAGAGCTTCAGGTCTTGGTTAATGAAGGTACTCTGAAAATCTCAGCAGCCAAGAAAC 1882
|||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 1940 AAACAGAGCTTCAGGTGTTGGTGAATGAAGGTACTCTGAAGATCTCAGCAACCAAGAAAC 1999
Query 1883 CTGAATGA 1890
||||||||
Sbjct 2000 CTGAATGA 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5