BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904671

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17155.1 | Symbols:  | Cysteine-rich protein | chr3:5850744-...   316    4e-86


> AT3G17155.1 | Symbols:  | Cysteine-rich protein | chr3:5850744-5851397 
FORWARD LENGTH=410
Length=410

 Score =  316 bits (171),  Expect = 4e-86
 Identities = 221/245 (90%), Gaps = 4/245 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTTGTACGAAAACTTTGGTGACTTGTTTCCTTGTAATAATAGTTGCAACTTCGTTC  60
            |||||| |||| ||||||||||||||||||||||||   |||||| |||||  |||||| 
Sbjct  49   ATGGGTAGTACAAAAACTTTGGTGACTTGTTTCCTTACGATAATACTTGCAGTTTCGTTG  108

Query  61   TCTAACCACAAAGTTTTGGCT-TCAGATGCAGGGATCGAAGGTTTTC-AAATTGACAACT  118
            ||||||||||| ||||||||| | ||||||||||||| |||| |||| | | |||| |||
Sbjct  109  TCTAACCACAACGTTTTGGCTAT-AGATGCAGGGATCAAAGG-TTTCGATACTGACCACT  166

Query  119  GCAATACTAGGTGTTACGGGCGGGATGAATGTATGAACTACTGTATTAGAGCTGGATTTC  178
            || |||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |
Sbjct  167  GCGATACTAGGTGTTACGGACGAGATGAATGTATGAACTACTGTATTAAAGCTGGATTCC  226

Query  179  CAAAAGGTGGACAGTGTGGGTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA  238
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  227  CAAAAGGTGGACAGTGTGGTTCTCTTTGTATTCCATGTGGTTTCAAATGTTGTTGCCAAA  286

Query  239  AGTAA  243
            |||||
Sbjct  287  AGTAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5