BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904675

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17185.1 | Symbols: TASIR-ARF, TAS3, ATTAS3 | TAS3/TASIR-ARF...   178    1e-44


> AT3G17185.1 | Symbols: TASIR-ARF, TAS3, ATTAS3 | TAS3/TASIR-ARF 
(TRANS-ACTING SIRNA3); other RNA | chr3:5861491-5862437 FORWARD 
LENGTH=555
Length=555

 Score =  178 bits (96),  Expect = 1e-44
 Identities = 132/149 (89%), Gaps = 4/149 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAGAGAGAGAAGAGCTCCCATGGATGAAAAGATTGAGAC-GAAAGTTTATCCAAGG  59
            ||| |||||||||||||||||||||||||||||  |  ||||| ||| |||| |||||||
Sbjct  58   ATGAAAGAGAGAGAAGAGCTCCCATGGATGAAATTAGCGAGACCGAA-GTTTCTCCAAGG  116

Query  60   CAATAAGAAAAACATAACC-CATGTGATGCATAGAGATTATTGGATCTGCTGTGCAGAGA  118
            || |||| ||||||||||| |  |||||||||||||||||||||||| ||||||| ||||
Sbjct  117  CATTAAGGAAAACATAACCTCC-GTGATGCATAGAGATTATTGGATCCGCTGTGCTGAGA  175

Query  119  CATTGAGTTTTTCTTCGGAAATCCAGTTT  147
            |||||||||||||||||| | ||||||||
Sbjct  176  CATTGAGTTTTTCTTCGGCATTCCAGTTT  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6539175630


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5