BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904679 Length=1008 Score E Sequences producing significant alignments: (Bits) Value AT3G17203.1 | Symbols: GA2OX5 | a pseudogene initially named GA... 534 5e-151 AT3G17200.1 | Symbols: | transposable element gene | chr3:5869... 161 1e-38 > AT3G17203.1 | Symbols: GA2OX5 | a pseudogene initially named GA2ox5 and thought to be a member of the gibberellin 2-oxidase enzyme family. It was later shown to have a large DNA insert in the putative gene model. | chr3:5870787-5872854 FORWARD LENGTH=2068 Length=2068 Score = 534 bits (289), Expect = 5e-151 Identities = 343/370 (93%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 368 GCTCCGCAGTGACTTGTTACGTAGAAGCAGTTAAGCAGTTGGCGTGTGAGATCTTAGATC 427 |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1226 GCTCTGCGGTGACGTGTTACGTAGAAGCAATTAAGCAGTTGGCGTGTGAGATCTTAGACC 1285 Query 428 TCACGGCTGAAGGACTTCGGCTCCCACCTCATACCTTCAGCAAATTAATCAGAGCCGTTG 487 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1286 TCACGGCTGAAGGACTACGGCTCCCACCTCATACCTTCAGCAAGTTAATCAGAGCCGTTG 1345 Query 488 ATAGCGACTCAGTTCTTAGGTTTAATCACTACCCATCGTCCGATCAATTTCTTAGTGGAG 547 |||||||||||||||| ||| |||||||||||||||| ||| ||||||| |||||||||| Sbjct 1346 ATAGCGACTCAGTTCTCAGGCTTAATCACTACCCATCATCCAATCAATTCCTTAGTGGAG 1405 Query 548 CCAACCTCTCTGATAAGTCTGTGTCATTACCGAGAGTTGGCTTCGGGGAGCACACAGACC 607 |||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1406 CCAAGGTTTCTGATATGTCTGTGTCATTACCGAGAGTTGGCTTCGGGGAACACACAGACC 1465 Query 608 CTCAGATCTTGACAGTTCTCAGATCCAACGGAGTAGGGGGCCTCCAGGTGGCATTCCCTG 667 |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 1466 CTCAGATCTTGACAGTCCTTAGATCCAATAGAGTAGGGGGCCTCCAGGTGGCATTCCCTG 1525 Query 668 ACGGAAGATGGGTCTCTGTCTCTCCTGACCCTTCTGCTTTTTGCGTAAACGTAGGCGATC 727 ||||||| |||||||||||||| ||||||||||| | |||||||||||||| ||||||| Sbjct 1526 ACGGAAGGTGGGTCTCTGTCTCCCCTGACCCTTCAACCTTTTGCGTAAACGTTGGCGATC 1585 Query 728 TTTTGCAGGT 737 |||||||||| Sbjct 1586 TTTTGCAGGT 1595 Score = 403 bits (218), Expect = 1e-111 Identities = 254/272 (93%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 97 AAAGCTTGCGAGTCCATTGGTTTCTTCAAAGTGGTCAACCACGGCGTTGACCCGGACGTT 156 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 88 AAAGCTTGCGAGACCATTGGTTTCTTCAAAGTGGTCAACCACGGTGTTGACCCGGACGTT 147 Query 157 ATCTCCCGGATGGAGCAAGAGTCCATAAACTTCTTCGCTAAACCGGTTCTTGAGAAGAAA 216 ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 148 ATCTCCCGGTTGGAGCAAGAGTCCATAAACTTCTTTGCTAAACCTGTTCTTGAGAAGAAA 207 Query 217 TCTGTCGGACCGGTGGTGAACCGGCCTTTTGGCTATGGGTTGAAGGACATTGGGCTCAAG 276 || |||||| ||||||| ||||||||||| || |||||| ||||| | ||||||||||| Sbjct 208 TCGGTCGGATCGGTGGTTAACCGGCCTTTCGGTTATGGGCTGAAGAATATTGGGCTCAAA 267 Query 277 GGTGATATTGGGGAGGTCGAGTATTTGCTCCTTCACACTAATCCTCTCTTCCTTTCTCAG 336 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 GGTGATATTGGAGAGGTCGAGTATTTGCTCCTTCACACTAATCCTCTCTTCCTTTCTCAG 327 Query 337 TTATCGTCTGGGAACGATTCTACCAAGTTCGG 368 ||||| | ||| |||||||||||||||||||| Sbjct 328 TTATCATTTGGTAACGATTCTACCAAGTTCGG 359 Score = 398 bits (215), Expect = 7e-110 Identities = 255/275 (93%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 734 AGGTAATGACGAATGGGAGATTCCTAAGCGTACGACACAGGGCGGTGACTACAGGACATG 793 |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| Sbjct 1794 AGGTGATGACGAATGGGAGATTCTTAAGCGTACGACACAGAGCGGTGACTACCGGACATG 1853 Query 794 CAAGCAGGTTATCGATGGCATACTTTGCCGGTCCGTCCGTCCATGCAAAGATAGGCCCTC 853 |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1854 CAAGCAGGCTATCGATGGCGTACTTTGCCGGTCCATCCGTCCATGCAAAGATAGGCCCTA 1913 Query 854 TCCCGACAATCGTCACGGCGGCAGATCAGCCACGGCTTTACCGGACGTTCACATGGGCTG 913 | ||| |||| || |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1914 TTCCGGGAATCATCCCGGCGGCAGAACAGCCACGGCTTTACCGGACGTTCACATGGGCTG 1973 Query 914 ACTACAAGAAGTTTGCTTACTCACTAGGCCTTGGAGATAACCGTCTTGACATTTTCCGCT 973 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1974 ACTACAAGAAGTTTGCTTACTCGCTAAGCCTTGGAGATAACCGTCTTGACATTTTCCGCT 2033 Query 974 CACGTGTCGATGAGGAAGATGAGTTGGGCTTCTAG 1008 || ||||||||||| | ||||| |||||||||||| Sbjct 2034 CATGTGTCGATGAGCATGATGAATTGGGCTTCTAG 2068 > AT3G17200.1 | Symbols: | transposable element gene | chr3:5869723-5870852 FORWARD LENGTH=1130 Length=1130 Score = 161 bits (87), Expect = 1e-38 Identities = 101/108 (94%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 ATGGTGAAGGAGTCCCAGAAAATCGTGGCCCTAGATCAAGACATACCCGTGATAGACATG 60 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 97 ATGGTGAAGGAGTCCCAGAAAATCGTGGCCGTAGATCAAGACATTCCCGTGATAGATATG 156 Query 61 TCCCAAGAGAGGTTACGAGTGTCCATGCAGATAGTTAAAGCTTGCGAG 108 ||| |||||||| ||||||||||||||||||||| |||||||||||| Sbjct 157 TCCTTAGAGAGGTCACGAGTGTCCATGCAGATAGTAAAAGCTTGCGAG 204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49380166501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5