BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904690
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17280.1 | Symbols: | F-box and associated interaction doma... 1435 0.0
AT3G17530.1 | Symbols: | F-box and associated interaction doma... 67.6 3e-10
> AT3G17280.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5903453-5904613 REVERSE LENGTH=1161
Length=1161
Score = 1435 bits (777), Expect = 0.0
Identities = 933/1009 (92%), Gaps = 8/1009 (1%)
Strand=Plus/Plus
Query 106 GCAAGTGAGATGGTGTTTCTGATGAATCATGAGGTTTATTCGATTAGCGTCGAAATCCAT 165
||||| |||| ||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 154 GCAAGGGAGACGGTGTTTCTGATGAATCATGAGGTTAATTCGATTAGCGTAGATATCCAT 213
Query 166 GGAATTCCAAAAGGCTGTTGGGCATCCATGGGGTTTACAGGTACACTCACCATACCCGAT 225
|||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 214 GGAATTCCAAAAGGCTATTCGGTATCCATGGATTTTACAGGTACACTCACCATACCCGAA 273
Query 226 GATTCAGATTTGGAAATATTTCGAATCCATCACTTG-GACGGTTTATTATTATGCGCCAC 284
| ||||||||||||||||||||||||||||||| || | ||||| || |||||||||||
Sbjct 274 GGTTCAGATTTGGAAATATTTCGAATCCATCAC-TGCAATGGTTTGTTCTTATGCGCCAC 332
Query 285 AATGGACTGTAGACTCGTAGTTTGGAATCCCTGTACTGGTCAAATCACATGGATCAAACC 344
|||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 333 AATGAACTGTAGACTCGTAGTTTGGAACCCCTGTACCGGTCAAATCACATGGATCATACC 392
Query 345 TAGAATTTGTTACAATAGTGATGATATATATGCTCTAGGATGTGGTAACAACAAATCATC 404
||||| | ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 393 TAGAACTCGTTACGATAGTGATGATATATATGCTCTAGGATGTGGTGACGACAAATCATC 452
Query 405 TTCTTTAGATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCACG-AAATGCCTGAGT 463
||||||| ||||||||||||||||||||||||||||||||||||| | ||| || | ||
Sbjct 453 TTCTTTACATAGCTACAAAATCTTGAGGTGTTGCGATGACAATCA-GAAAAAACCAGTGT 511
Query 464 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGGTCTTGATGGCGTCACTGCAAATT 523
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 512 CTGAAATCTATGATTTTAGTTCTAGTTCATGGAGGGTTCTTGATGGCGTCACTGCAAATT 571
Query 524 GCTTCATAGAATGTAATGGTGTGACTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGATG 583
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 572 GTTTCATAGAATGTAATGGCGTGGCTTTGAAGGAAAGTGCTTACTGGTATGCTTCAGAT- 630
Query 584 AAAA-AGAAACCCCCACGGGTAAATTCATACTCAGGTTTGATTTCGCAACGGAGACATTT 642
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 631 AAAAGAGAAACTCCCAAGGGTAAATTCATACTCAGGTTTGATTTTGCAACGGAGAGATTT 690
Query 643 GCACGTCTATGTCTGCCCCTTACCTTTCAGAGGGATCATGATAATAAGAGTGTGCTTGTG 702
|||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 691 GCACGTCTATGTCTTCCCCTTAATTTTCAGAGGGATCGTGATAATAAGAGTGTGGTTGTG 750
Query 703 TCTGTTGTTGGAGAAGAGAAACTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATAGT 762
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 751 TCTGTTGTTGGAGAAGAGAAGCTTGCTTTGTTACAGCAGTTCGACCATAGGGTTCATGGT 810
Query 763 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGCCAAAGAC 822
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 811 TTGAAATATTCTAAGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGGCAAAGAC 870
Query 823 TTGTCGTGGAGCAACTTTTTAGTTGTGGATCTTGCTGACGATAATCTACCGAGTGTAACA 882
||||||||||||||| | ||||| | ||| |||||||||||||||||||| ||||||||
Sbjct 871 TTGTCGTGGAGCAACATCTTAGTAGAGGAACTTGCTGACGATAATCTACCAAGTGTAACG 930
Query 883 AGTTTCCTGTTGGATGAAGAGAAAAGAGTGGCTGTGTGTTCTGATGCAGTGTGTTCTGAT 942
|||||||||||||| || ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 931 AGTTTCCTGTTGGACGAGGAGAAAAAAGTGGCAGTGTGTTCTGACGCAGTGTGTTCTGAT 990
Query 943 CCAGACACGGAAGATGAAGATAGGAGCAGAATCTACATTGTTGGAGAAGATGTAGATAAA 1002
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 991 ACAGACACGGAAGATGAAGATAGGAGAAGAATCTACATTGTTGGAGAAGGTGTAGATGAA 1050
Query 1003 TTCGTCTATGATGACGTTTCAACAGAAACATGGCC-CAATCAGCCATTTCTCGTCAATTA 1061
|||||||||||||| |||||||| ||||||| || |||| |||||||||||||| |||
Sbjct 1051 TTCGTCTATGATGAAGTTTCAACGGAAACATC-CCACAATTGGCCATTTCTCGTCAGTTA 1109
Query 1062 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1110
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGTTCCAAATCTGGTTCACATTGAGAAAGATGCACCCATAGTCGAAGTG 1158
Score = 148 bits (80), Expect = 9e-35
Identities = 98/107 (92%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 ATGACGATGATTTCCGATCTTCCATACGATTTGTTATCGGAAATACTCTCTAGGCTTCCG 60
||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1 ATGACGACGATTTCCGATCTTCCATACGATTTGTTACCGGAGATACTCTCTAGACTTCCG 60
Query 61 ATCAAGTCTCTACCGAAACTGAAAACCACTTGCAAGCGATGGTACGC 107
| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 61 ACCAAGTCTATACCGAAACTGAAAACCACTTGCAAAAAATGGTACGC 107
> AT3G17530.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6000860-6002282 FORWARD LENGTH=1423
Length=1423
Score = 67.6 bits (36), Expect = 3e-10
Identities = 56/65 (86%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 776 AGATAAAGATATGGGTGACCGATACTAAGATCGGTGAGGCCAAAGACTTGTCGTGGAGCA 835
|||| | ||| ||||| ||| | | |||||| | ||||||||||||||||||||||||||
Sbjct 818 AGATGAGGATTTGGGTCACC-A-A-TAAGATTGATGAGGCCAAAGACTTGTCGTGGAGCA 874
Query 836 ACTTT 840
|||||
Sbjct 875 ACTTT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5