BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904694
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17320.1 | Symbols: | F-box and associated interaction doma... 507 1e-142
AT3G16740.1 | Symbols: | F-box and associated interaction doma... 294 1e-78
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 143 4e-33
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 91.6 1e-17
AT3G22940.1 | Symbols: | F-box associated ubiquitination effec... 67.6 2e-10
> AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5915427-5916656 REVERSE LENGTH=1230
Length=1230
Score = 507 bits (274), Expect = 1e-142
Identities = 456/539 (85%), Gaps = 32/539 (6%)
Strand=Plus/Plus
Query 1 ATGACGAAGATTTCCGATCTTCCTAGGGATTTGGCAGAGGAGGTGCTCTCTAGGGTTCCA 60
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGACGAAAATTTCCGATCTTCCTCGGGATTTGGCAGAGGAGGTGCTCTCTAGGGTCCCA 60
Query 61 GTTACAT-CTCTGAGAGCAGTACGATTTACTTGCAAAAAGTGGAACACTTTAACTAAACA 119
|| |||| | || |||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 61 GTGACATAC-CTAAGAGCAATACGATTCACTTGCAAAAAGTGGAACACTTTAACCAAACG 119
Query 120 TCGGAGCTTTACAAAGAAGCTGGTTTGTCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGC 179
| | |||||||||||||||||| || |||||| |||| || || ||| | || | |
Sbjct 120 TAGAAGCTTTACAAAGAAGCTGATTGGTCAAG-AAAA--AG--CCGAAGCA-AA--A-GT 170
Query 180 GAAGGAGTTTCATGCGATCATGACGATGAATTATAAG-GTTTATCTGATGAGCGTCAATC 238
||| ||||||||||||||||||||| |||||| | || || ||||||||||||||||||
Sbjct 171 GAAAGAGTTTCATGCGATCATGACGTTGAATTCT-AGACTTCATCTGATGAGCGTCAATC 229
Query 239 TAGATGAAATTCACAAAGATGACAACGTTGAATCATCTATAAAGCAGAAAGGTAAACTTA 298
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 230 TAGATGGAATTCACAAAGACGAAAACGTTGAATCATCTATAAAGCAGAAAGGTAAACTTA 289
Query 299 TTAGCCTAAACGTTGCTGATC--GA-ATAA--GT-ATATCTCAAGTTTGTCACTGTGATG 352
||||||||| ||||||||||| || | || || ||||||||||||| |||||| ||||
Sbjct 290 TTAGCCTAACCGTTGCTGATCCTGATAGAATAGTTATATCTCAAGTTTATCACTGCGATG 349
Query 353 GTTTGTTGTTATGCATCACCAATGACA-A--CTCTAGGCTTGTGGTTTGGAACCCTTATT 409
||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||
Sbjct 350 GTTTGTTGTTATGCATCACCAATGAAATAAACTCTAGGCTTGTAGTTTGGAACCCTTATA 409
Query 410 CTGGGCAAACAAGAAGGGTCCAACCTCGAATTTCTTACAAGAGA-TGGGACTACTACAAG 468
||||||||| || || || ||||| ||| ||||||| | || |||||| | | |
Sbjct 410 GTGGGCAAACTAGGTGGATCGAACCTAGAACTTCTTACC-GCGAATGGGAC-A-T-C--- 462
Query 469 TATGCTCTCGGGTACGAGA-TGAATAACAACTCTTATCGTAGCCACAAAATTTTGAGAT 526
|| ||||| || ||||||| | || |||||| | | || ||| |||||||||||||||
Sbjct 463 TACGCTCTAGGATACGAGAGT-AAGAACAACGCCAAACGAAGCTACAAAATTTTGAGAT 520
> AT3G16740.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5699333-5700826 FORWARD LENGTH=1494
Length=1494
Score = 294 bits (159), Expect = 1e-78
Identities = 416/532 (78%), Gaps = 50/532 (9%)
Strand=Plus/Plus
Query 8 AGATTTCCGATCTTCCTA-GGGATTTGGCAGAGGAGGTGCTCTCTAGGGTTCCAGTTACA 66
|||||||||||||||| | |||||||| |||||||||||||||||||| |||| || |||
Sbjct 151 AGATTTCCGATCTTCC-ACGGGATTTGACAGAGGAGGTGCTCTCTAGGATTCCGGTGACA 209
Query 67 TCTCTGAGAGCAGT-ACGATTTACTTGCAAAAAGTGGAACACTTTAACTAAACATCGGAG 125
||| |||||||||| | ||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 210 TCTATGAGAGCAGTGA-GATTTACTTGCAAAAAGTGGAACACCTTATCGAAAGATCGGAG 268
Query 126 CTTTACAAAGAAGCTGGTTTGTCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGCGAAGGA 185
|||||||||||||| | || ||||| ||||| | |||||||||||||| |||||||
Sbjct 269 CTTTACAAAGAAGCACCTGCGTGGAGCAAGAGCAGCAGCAAAGAAGAAGCAGACGAAGGA 328
Query 186 GTTTCATGCGATCATGACGA-TGAATTATAAGGTTTATCTGATGAGCGTCAATCTAGATG 244
|||||| | |||||||| || | |||| || ||||||| | | | | | | || |
Sbjct 329 GTTTCAGGTGATCATGATGATTCAATT-TAGGGTTTAT-T--T-A---T--A-C-AG-CG 375
Query 245 AAATTCACAAAGATGACAACGTTGAAT-CATCTATAAAGCAG-AAAGGTAAACTTATTAG 302
| | || | | | || ||| |||| ||| ||| | | |||||||||||||||
Sbjct 376 ----T--C-AACCT--C--C-TT-AATCCATCAATAGAGC-GTATAGGTAAACTTATTAG 421
Query 303 CCTAAACGTTGCTGATCGAAT-AAG-TATATCTCAAGT-TTGTCACTGTGATGGTTTGTT 359
|||| |||||| |||| || | |||||| || | || |||||| | ||||| ||
Sbjct 422 CCTAGACGTTGAAGATC--ATGTCGACATATCTAAAATCTT-TCACTGCGGCGGTTTATT 478
Query 360 GTTATGCATCACCAATGACA-ACTCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAA 418
|||||| |||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTATGTATCACCAAAGACATA-TCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAA 537
Query 419 CAAGAAGGGTCCAACCTCGAATTTCTTACAAGAGATGGGACTACTACAAGTATGCTCTCG 478
|||| || || ||||| ||| ||||||| | |||| |||| | ||| ||| | |
Sbjct 538 CAAGGTGGATCAAACCTAGAAATTCTTACCACAGATTGGAC-AG-----GTACGCTTTAG 591
Query 479 GGTACGA-GATGAATAACAACTCTTATCGTAGCCACAAAATTTTGAGATTTA 529
| ||||| || ||| ||||| || | |||| || ||||||| ||||||||||
Sbjct 592 GATACGAAGA-GAAGAACAAGTCGTGTCGTTGCTACAAAATCTTGAGATTTA 642
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 143 bits (77), Expect = 4e-33
Identities = 298/398 (75%), Gaps = 41/398 (10%)
Strand=Plus/Plus
Query 32 TGGCAGAGGAGGTGCTCTCTAGGGTTCCAG-TTACATCTCTGAG-AGCAGTACGATTTAC 89
|||| ||||||||||| ||||||||||| | | |||||||| || || | | ||||||||
Sbjct 2 TGGCGGAGGAGGTGCTTTCTAGGGTTCC-GATGACATCTCTAAGAAG-ACTCCGATTTAC 59
Query 90 TTGCAAAAAGTGGAACACTTTAACTAAACATCGGAGCTTTACAAAGAAGC---TGGTTTG 146
|||||||||||||||||||||| ||| | | |||||||| ||||||||| | |||||
Sbjct 60 TTGCAAAAAGTGGAACACTTTATCTAGATGTAGGAGCTTTGCAAAGAAGCACCTTGTTTG 119
Query 147 TCAAGCAAAAGCAGAACCAAAGAAGAAGCAGGCGAAGGAGTTTCATGCGATCATGACGAT 206
||||||||||| || ||||||| ||| || | | || | | | |||||| |||
Sbjct 120 TCAAGCAAAAGTAGCTGCAAAGAA-AAG-AGA-GTATAAGGT----G-G-TCATGATGAT 170
Query 207 GAATTATAAGGTTTATCTGATGAGCGTCAATCTAGATGAAATTCACAAAGATGACAACGT 266
| ||| || ||||||| ||||| || || | | || |||| || |||||||
Sbjct 171 GGATTTTAGGGTTTATTTGATG--CG-CA-TA-A-ATC---TTCA----GA--ACAACGT 215
Query 267 TGAATCATCTATAAAGCA-GAAAGGTAAACTTATTAGCCTAAACG-TTGCTGATCGAATA 324
||||| | |||||||| ||| | | ||||| || || ||| || | |||| |||
Sbjct 216 TGAATTGTGTATAAAGCGTGAACG-TGAACTTCTTTTCCCCGACGCTT-CAGATCAAATT 273
Query 325 AGTATATC--TCAAGT-TTGTCACTGTGATGGTTTGTTGTTATGCATCACCAATGACAAC 381
|| || ||| || || |||||| || ||||| ||||||||||||| || ||||||
Sbjct 274 --TACGTCCGTCACGTCTT-TCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAAC 330
Query 382 TCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAAC 419
|||||||||||||||| ||||| ||| ||| |||||
Sbjct 331 CCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAAC 368
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 91.6 bits (49), Expect = 1e-17
Identities = 96/118 (81%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 955 CGCAACACAGCCAACATCGTTGGAGTGGATGGATACGACAAAGAAGCGGATCTCGGAGAA 1014
||||||| ||| ||||| ||||||||||||||| | |||| || |||||||||||
Sbjct 1166 CGCAACATAGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAGAT 1225
Query 1015 TCTGTCCACAAATATTGTTTTCCACTTGTGTGCTCTTATGTTCCGAGT-TCAGTGCAA 1071
|| | | | || | ||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1226 TCAG-AC-CGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCT-AGTGCAA 1279
> AT3G22940.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8131468-8132706 FORWARD LENGTH=1239
Length=1239
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1036 CCACTTGTGTGCTCTTATGTTCCGAGTTCAGTGCAAATC 1074
|||||||||||||||||||||||||||| ||||||||||
Sbjct 1060 CCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCAAATC 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5