BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904722
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17600.1 | Symbols: IAA31 | indole-3-acetic acid inducible 3... 804 0.0
> AT3G17600.1 | Symbols: IAA31 | indole-3-acetic acid inducible
31 | chr3:6020025-6021142 REVERSE LENGTH=835
Length=835
Score = 804 bits (435), Expect = 0.0
Identities = 463/477 (97%), Gaps = 0/477 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTTTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAGCCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 103 ATGGAGGTCTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAACCT 162
Query 61 TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGCCTCACTTTTCCTTCTACTTCTCCA 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 163 TCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGTCTCACATTTCCTTCTACTTCTCCA 222
Query 121 CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTCGATTAAGAGATACACTAAAG 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 223 CAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTAGATTAAGAGATACACTAAAG 282
Query 181 GGTCGTCGCCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGTCGTCGTCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAA 342
Query 241 GGTGTCCCCATTGGAAGAAAACTCGACCTTTGCGCATTCTCAGGCTACGAGAGCCTATTA 300
||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 343 GGTGTTCCCATTGGAAGAAAACTCGACCTTTGCGTATTCTCAGGCTACGAGAGTCTATTA 402
Query 301 GAAAATCTTTCTCACATGTTTGATACTTCAATCATCTGCGGTAACCGAGATAGAAAACAT 360
|||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 403 GAAAATCTCTCTCACATGTTCGATACTTCAATCATCTGCGGTAATCGAGATCGAAAACAT 462
Query 361 CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGGGATATTCCATGG 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 463 CATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGATATTCCATGG 522
Query 421 GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5