BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904726
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17620.1 | Symbols: | F-box and associated interaction doma... 1334 0.0
AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5... 420 2e-116
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 248 9e-65
> AT3G17620.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6026446-6027694 REVERSE LENGTH=1249
Length=1249
Score = 1334 bits (722), Expect = 0.0
Identities = 1040/1191 (87%), Gaps = 32/1191 (3%)
Strand=Plus/Plus
Query 1 ATGATGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTG-CTGTCTAGGCTTCCAGTGAC 59
|||||||||||||||||||| |||||| ||||| | | || |||||| |||| ||||
Sbjct 1 ATGATGTCCGATCTTCCAAGAGATTTGTTGGAGGA-GAGACTCTCTAGGGTTCCGGTGAA 59
Query 60 ATC-TCTAAGAGGGTTC-CGAGCTGCTTGCAAAAAATGGAACACTTTGTCCAAAGAGCGG 117
||| | | ||| | | ||| | | |||||||| ||||| || || |||||| |||||
Sbjct 60 ATCAT-TGAGA-GAAGCGCGATTTACCTGCAAAAATTGGAAAACATTATCCAAAAAGCGG 117
Query 118 AGCTTTACAAGGAAACACCTTGCTC---AAGCAAAAGC-AGCGGCAGCAAGGGAGTTTAT 173
|||||||||| ||| |||||||||| |||||| | | || || | ||| |||||||
Sbjct 118 AGCTTTACAAAGAAGCACCTTGCTCAGGAAGCAACATCAAG-GG-A--AAGTGAGTTTAA 173
Query 174 GGTGGTCATGGTGATGAATTCTCGGGTTTATTTGATGGGCATCAATCTCCATGGAGTTCA 233
||| |||||||| || ||| | ||||||| | | | ||||||| |||| |||| ||||
Sbjct 174 GGTTGTCATGGTCTTGCATTGTAAGGTTTATCTAACGAGCATCAACCTCCGTGGAATTCA 233
Query 234 CGA-GAGCGTTGACCCATCTATAAACCATCAGGGTAAACTCGTTAGCCTAAACGATTCAG 292
| | | || ||||||| |||||||||| ||| | |||||| ||||||||||||| | |||
Sbjct 234 CAACG-GCTTTGACCCGTCTATAAACCGTCAAGCTAAACTTGTTAGCCTAAACGGTACAG 292
Query 293 ATCGGGTCGATATATCTAG-AGTATATCACTGCGACGGTTTACTGTTATGCATCGCGAAA 351
||| | ||||||||||| | |||||||||||||||||||||||||||||| ||| |||||
Sbjct 293 ATCAGATCGATATATCT-GAAGTATATCACTGCGACGGTTTACTGTTATGTATCTCGAAA 351
Query 352 AACTACTCTAGGTTCGTGGTTTGGAATCCGTACT-CGTGCAAAACTTTGTGGCTCAAACC 410
||||| ||||| ||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 352 GACTACACTAGGGTCGTGGTTTGGAATCCGTA-TAGGAGCCAAACTTTGTGGCTCAAACC 410
Query 411 CAGAAGTCCCCACCCTAGATTGGACTGGTATA-CATATGCTATAGGATACGAGAAGCGCA 469
||| ||||| ||| |||| |||||||||||| | | ||||||||||||||||||||| |
Sbjct 411 CAGTAGTCCTGACCATAGAATGGACTGGTATATC-TGTGCTATAGGATACGAGAAGCGTA 469
Query 470 AATCATGCCGGA-ACTACAAAGTTTTGAGATTCGTTGATCTTGCCGAA-ACAGAATTTGT 527
||||| ||| | ||||||||||||| ||||||||||| |||||||| | |||||||||
Sbjct 470 AATCAAGCC-TACGCTACAAAGTTTTGCGATTCGTTGATTTTGCCGAAGA-AGAATTTGT 527
Query 528 TAAGTACGAAATCTACGAGTTAAAGTCTAATTCATTGAGGGTTCTTGATGTCACTTCCGA 587
| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 528 TGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACTTCCGA 587
Query 588 CTGGAAAATAGAGTTTTATGCACGTGGTGTCTCTCTTAAGGGAAATACTTATTGGTTTGC 647
|||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 588 CTGGGAAGTAGAGTTTTATGCACGAGGTGTCTCTCTCAAGGGAAATACTTATTGGTTTGC 647
Query 648 TACAGACAAGTTTCCGGAAATCAGCAATAATGTTAGACATAGTGTTGATTTCTTGATCTG 707
||||||||||||||| |||||||||| |||| ||| |||||||||| |||||||| ||||
Sbjct 648 TACAGACAAGTTTCCAGAAATCAGCAGTAATCTTATACATAGTGTTTATTTCTTGCTCTG 707
Query 708 TTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCCTTTGCCGTTTTACTCTCTGAA 767
|||||||||||||||||||||||||||||||||||||| |||||||| |||| || || |
Sbjct 708 TTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCATTTGCCGTGTTACCCTATGGA 767
Query 768 TGGAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTATTTCAGCG 827
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TGTAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTATTTCAGCG 827
Query 828 CG-GTGACAATTTAAAGATGGAGATTTGGGTTACGACTAAGATTGAACCTGAAGTGGTGT 886
| ||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 TAAG-GACAACTTACATATGGAGATTTGGGTTACGACTAAGATTGAACCTGAAGAGGTGA 886
Query 887 TGTGGGGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTTCAATTTTT-A 945
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 887 TGTGGAGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTT-AAGTTTGGA 945
Query 946 TATA-CAGATGCAAGTTTCATCATTGACGAAGAGGAGAAAGTTGTTGTAGTGTTTGATAA 1004
|| ||||||| ||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 946 -ATTGCAGATGCGAGTTTCATCATTGACGAAGAGAAGAAAGTTGTTGTAGTCTTTGCTAA 1004
Query 1005 AGACAAAGATGTAATGAATACCACTCGCAACACAGCTTACATCATTGGAGAGGATGGATA 1064
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1005 AGACAAAGATGTAATGTATCCCACTCACAACACAGCTTACATCATTGGAGAGGATGGATA 1064
Query 1065 TTACAAAGAGGTGGATCTCGGAAAATCTACTGATGAATTTCAATATCCACTTGTGTGCTC 1124
||||||||| ||||||||||||||| |||||||| || ||| | ||||||||||||||||
Sbjct 1065 TTACAAAGAAGTGGATCTCGGAAAAACTACTGATAAAATTCGAGATCCACTTGTGTGCTC 1124
Query 1125 GTATGTTCCAAGCTCAGCGCAAATCAAGCAAGGAAACAAAAGGAAGAAAAA 1175
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1125 GTATGTTCCAAGCTCAGCGCAAATCAAGCAAGGAGGCAAAAGGAAGAAAAA 1175
> AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5955444
FORWARD LENGTH=558
Length=558
Score = 420 bits (227), Expect = 2e-116
Identities = 392/469 (84%), Gaps = 21/469 (4%)
Strand=Plus/Plus
Query 5 TGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTGCTGTCTAGGCTTCCAGTGACATCTC 64
|||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||
Sbjct 11 TGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCGGTGACATCTC 70
Query 65 TAAGAGGGTTCCGAGCTGCTTGCAAAAAATGGAACACTTTGTCCAAAGAGCGGAGCTTTA 124
| |||||| || ||||| |||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 71 TGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATCGGAGCTTTA 130
Query 125 CAAGGAAACACCTTGCTCAAGCAAAAGCAGCGGCAGCAAGGGAGTTTATGGTGGTCATGG 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 131 CAAGGAAACACCTTGCTCAAGCCAAAGCAGCGGCAGCAAGGGAGTTTATGGTGGTCATGG 190
Query 185 TGATGAATTCTCGGGTTTATTTGATGGGCATCAATCTCCATGGAGTTCACGAGAGCGTTG 244
||||| ||| || |||||||||||||||||||||||||||| | | | || |||||
Sbjct 191 TGATGGATTTTCAGGTTTATTTGATGGGCATCAATCTCCAT--A----A-G-GA-CGTTG 241
Query 245 ACCCATCTATAAACCATCAGGGTAAACTCGTTAGCCTAAACGATTC-AGATCGGGTCGAT 303
|| || |||||||| ||| |||||||| ||||| || ||||||| | ||| ||||||
Sbjct 242 ACGCAACTATAAACGGTCAAGGTAAACTTATTAGCTTAGACGATTCCA-ATCAAGTCGAT 300
Query 304 ATATCT-AGAGTATATCACTGCGACGGTTTACTGTTATGCATCGCGAAAA-ACTACTCTA 361
|||||| | || |||||||||||| ||||| | ||||||||| | |||| ||| | |||
Sbjct 301 ATATCTTAC-GTCTATCACTGCGACAGTTTAGTCTTATGCATCCC-AAAAGACTGCGCTA 358
Query 362 GG-TTCGTGGTTTGGAATCCGTACTCGTGCAAAACTTTGTGGCTCAAACCCAGAAGTCCC 420
|| || || |||||||||||||| | | || |||| || ||| |||| |||| ||||
Sbjct 359 GGCTT-GTTGTTTGGAATCCGTATTGGGGCCAAACCTTATGGTTCAAGCCCACTAGTCTT 417
Query 421 CACCCTAGATTG-G-ACTGGTATACATATGCTATAGGATACGAGAAGCG 467
| || | || | ||||||||| |||||||| |||||| ||| |||
Sbjct 418 CGCCATT--TTCCGCACTGGTATATGTATGCTATTGGATACCAGATGCG 464
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 248 bits (134), Expect = 9e-65
Identities = 373/481 (78%), Gaps = 46/481 (10%)
Strand=Plus/Plus
Query 693 TGATTTCTTGATCTGTTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTC-CTTTGC 751
||| ||||||||||||||| | |||||| | ||||||||||| |||||||||| | |||
Sbjct 720 TGACTTCTTGATCTGTTTTGACTTTACAACAGAGAGATTTGGACCGCGTCTTCAC-CTGC 778
Query 752 CGTTTTACTCTCTGAAT-GGA-GATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACT 809
| ||| |||||| | | || |||||||||| ||| ||||||||||||||||| || ||
Sbjct 779 CCTTTCACTCTC--ATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCT 836
Query 810 TGCTGTGTT-ATTTCAGCGCGGTGACAATTTA---AAGATGGAGATTTGGGTTACGACTA 865
||| ||||| | || ||||| | | ||||| | |||||||||||||||||||||||
Sbjct 837 TGCGGTGTTGA-TTAAGCGC--T-TCGATTTATGGAGGATGGAGATTTGGGTTACGACTA 892
Query 866 AGATTGAACCTGAAGT-GGTGTTGTGGGGCAAGTTGTTCTTAGCAGTGGATATGCA-ACC 923
||||||| ||| ||| ||| | ||| ||||||||||||||| || |||||| | |||
Sbjct 893 AGATTGAGCCT-AAGGAGGTCTCATGGAACAAGTTGTTCTTAGCGGTTGATATG-ATACC 950
Query 924 ACT---CACTGATTTTCAATTTT-TATATACAGATGCAAGTTTCATCATTGACGAAGAGG 979
||| ||||| |||||| |||| || || | || | |||| |||||||||| || |
Sbjct 951 ACTGATCACTGCTTTTCAGTTTTGTA-AT---G-TG-A-GTTTTTTCATTGACGA-GAAG 1002
Query 980 A-GAAAGTTGTTGTAGTGT-TTGATAAAGACAAAGATGTAATGAATACCACTCGCAACAC 1037
| ||| || || || || | ||| |||||| | ||| ||||||| || | ||||
Sbjct 1003 AAGAATGTCGTCGTGGT-TCTTGGTAAAGAT---G-TGT--TGAATAC-AC--GAAACAT 1052
Query 1038 AGCTTACATCATTGGAGAGGATGGATA-TTACAAAGAGGTGGATCTCGGAAAATCTACTG 1096
|||| | || |||||| | |||||||| || ||| | |||||||| ||| |||||||
Sbjct 1053 AGCTAATATTATTGGAAATGATGGATACTTT-AAACAAGTGGATCTTGGAGAATCTACAA 1111
Query 1097 ATGAAT-TTCAATATCCACTTGTGTGCTCGTATGTTCCAAGCTCAGCGCAAATCAAGCAA 1155
| ||| || || |||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 1112 ACAAATATTGT-TACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAA 1170
Query 1156 G 1156
|
Sbjct 1171 G 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5