BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904738
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17730.1 | Symbols: anac057, NAC057 | NAC domain containing ... 1264 0.0
> AT3G17730.1 | Symbols: anac057, NAC057 | NAC domain containing
protein 57 | chr3:6064379-6065813 FORWARD LENGTH=741
Length=741
Score = 1264 bits (684), Expect = 0.0
Identities = 722/741 (97%), Gaps = 0/741 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCAGTAGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTA 60
Query 61 AACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCGAGCTTGATATAATCCCCGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCGAGCTTGATATAATTCCCGAG 120
Query 121 GTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGA 180
Query 181 GATCCGGAGTGGTAtttttttGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCCGGAGTGGTATTTTTTTGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACG 240
Query 241 AACCGAGCAACGAGAGGTGGATACTGGAAATCGACTGGCAAAGATCGGAGAGTGACAAGT 300
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGT 300
Query 301 CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAA 360
Query 361 GGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCGATGATAAGGATTGTGACGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCGATGATAAGGATTGTGACGAT 420
Query 421 CCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAGAAGAACGGAATATGT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGT 480
Query 481 TCAGAGTTGGAATCAGAACGGCAATTACAAACGGGACAATGTAGCTTCACGACGGCGTCA 540
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 481 TCGGAGTTGGAATCAGAACGGCAATTGCAAACGGGACAATGTAGCTTCACAACGGCGTCA 540
Query 541 ATGGAGGAGATCAATTCGAATAATAACAATAACTACAATAACGAATACGAGACAATGTCG 600
||||||||||||||||||||||| ||||| || || ||||| || || ||||||||||||
Sbjct 541 ATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCG 600
Query 601 CCGGAAGTGGGAATTTCTTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCG 660
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCG 660
Query 661 TGGATGCAGTTTATAACAGATGACGCATGGGACACGTCATCAAATGGTGCAGCTATGGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGATGCAGTTTATAACAGATGACGCATGGGACACGTCATCAAATGGTGCAGCTATGGGA 720
Query 721 CATGGTCAAGGTGTTTATTGA 741
||||||||||| |||||||||
Sbjct 721 CATGGTCAAGGGGTTTATTGA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5