BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904746
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17790.1 | Symbols: ATACP5, ATPAP17, PAP17 | purple acid pho... 1615 0.0
> AT3G17790.1 | Symbols: ATACP5, ATPAP17, PAP17 | purple acid phosphatase
17 | chr3:6089605-6091231 FORWARD LENGTH=1434
Length=1434
Score = 1615 bits (874), Expect = 0.0
Identities = 965/1009 (96%), Gaps = 6/1009 (1%)
Strand=Plus/Plus
Query 9 TCGTCGATCGTTAATGTCCGCCACGGCGAGTCTGTGTTTGCTATTGTCTATCTTCACCAC 68
|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct 186 TCGTCGATCGTTAATGTCCGCCACGGCGAGTCTGAGTTTGCTGTTGTGTATCTTCACCAC 245
Query 69 CTTCGTCGTGGTGTCTAACGGTGAGCTTCAGAGATTTATAGAGCCGGCGAAAAGTGACGG 128
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 246 CTTCGTCGTGGTGTCGAACGGTGAGCTTCAGAGATTTATAGAGCCGGCTAAAAGCGACGG 305
Query 129 TTCCGTTAGTTTTATAGTCATCGGAGATTGGGGTCGCCGTGGCTCCTTCAATCAGTCTAT 188
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 306 TTCCGTTAGTTTTATAGTCATCGGAGATTGGGGTCGTCGTGGCTCCTTCAATCAGTCTCT 365
Query 189 CGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATAGATTTAGATTTCGTGGTGTCTAC 248
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 366 CGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCTAC 425
Query 249 GGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATC 485
Query 309 TTTCTCTAATATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTGTTTTGGGAAA 368
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTTCTCTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTGTTTTGGGAAA 545
Query 369 CCATGACTATAGAGGTGACGCAGAAGCTCAGCTAAGCTCTGTTCTCCGGGAAATCGATAG 428
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 546 CCATGACTATAGAGGTGACGCAGAAGCTCAGCTGAGTTCTGTTCTCCGGGAAATCGACAG 605
Query 429 CCGTTGGATTTGTCTTCGATCATTTGTCGTTGATGCAGAGTTAGTCGAGATGTTCTTTGT 488
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 606 CCGTTGGATTTGTCTTCGATCATTTGTCGTTGATGCAGAGTTGGTAGAGATGTTCTTTGT 665
Query 489 TGACACGACTCCATTT-GTCAAAGAATACTACACAGAAGCAGATGGTCACACATACGATT 547
|||||||||||| ||| || |||||||||||||||||||||||||||||| |||| ||||
Sbjct 666 TGACACGACTCC-TTTCGTGAAAGAATACTACACAGAAGCAGATGGTCACTCATATGATT 724
Query 548 GGCGCGCAGTTCCATCTCGCAACTCTTATGTCAA-GTCCCTCCTCGGTGATCTTGAAGTT 606
|||||||||||||||||||||||||||||||||| | | || ||| ||||||||||||||
Sbjct 725 GGCGCGCAGTTCCATCTCGCAACTCTTATGTCAAAG-CTCTTCTCCGTGATCTTGAAGTT 783
Query 607 TCCTTAAAGAGTTCCAAAGCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGC 666
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TCCTTAAAGAGTTCTAAAGCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGC 843
Query 667 ATTGGACACCATGGAGATACTAAGGAGCTCAACGAAGAGCTTCTTCCAATTCTCAAAGAG 726
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 844 ATTGGACATCATGGAGATACTAAAGAGCTCAACGAAGAGCTTCTTCCGATTCTTAAAGAG 903
Query 727 AACGGTGTTGATCTCTATATGAATGGACACGATCATTGTCTTCAGCATATGAGTGATGAA 786
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 904 AACGGTGTTGATCTCTACATGAATGGACATGATCATTGTCTTCAACATATGAGTGATGAA 963
Query 787 GACAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATA 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GACAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATT 1023
Query 847 AACCCAGTGACCATCAATCCCAAGTCT-CTGAAATTTTATTACGATGGTCAAGGATTCAT 905
|||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||
Sbjct 1024 AACCCAGTGACCATCAATCCCAAG-CTACTGAAATTCTATTATGATGGTCAAGGATTCAT 1082
Query 906 GTCCGCTCGGTTCACTCACTCAGATGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGGT 965
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1083 GTCTGCTCGGTTCACTCACTCGGACGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGAT 1142
Query 966 TTTGCACAAATGGGTTACTTCTAAACAACTTCTTCATTCCTCTGTTTGA 1014
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1143 TTTGCACAAATGGGTCACTTCTAAACAACTTCTTCATTCCTCTGTTTGA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5