BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904771

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18040.1 | Symbols: MPK9 | MAP kinase 9 | chr3:6174719-61784...  89.8    2e-17


> AT3G18040.1 | Symbols: MPK9 | MAP kinase 9 | chr3:6174719-6178465 
FORWARD LENGTH=1929
Length=1929

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 54/57 (95%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  283  gcgaaaagTTTCGGACTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG  339
            ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GCGAAAAGTTTCTCCCTTGTTAGAGATTTTGATTTGTCTGGTTTGAACTGCATTAGG  57



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5