BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904814
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18400.1 | Symbols: anac058, NAC058 | NAC domain containing ... 1657 0.0
> AT3G18400.1 | Symbols: anac058, NAC058 | NAC domain containing
protein 58 | chr3:6318745-6320593 REVERSE LENGTH=945
Length=945
Score = 1657 bits (897), Expect = 0.0
Identities = 929/945 (98%), Gaps = 0/945 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAATCTTCCTCCGGGATTCAGATTTCATCCTACTGACGAGGAGCTCATAACT 60
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAAGAAAATCTTCCTCCGGGGTTCAGATTTCATCCTACAGACGAGGAGCTCATAACG 60
Query 61 CATTATCTATGTAGGAAAGTCTCCGATATTGGATTCACCGGTAAAGCTGTCGTCGACGTT 120
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CATTATCTATGTCGGAAAGTCTCCGATATAGGATTCACCGGTAAAGCTGTCGTCGACGTT 120
Query 121 GATCTCAACAAGTGTGAACCTTGGGATTTGCCAGCCAAGGCTTCAATGGGAGAGAAAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTCAACAAGTGTGAACCTTGGGATTTGCCAGCCAAGGCTTCAATGGGAGAGAAAGAG 180
Query 181 TGGTATTTCTTCAGCCAAAGGGATCGGAAATATCCAACCGGTTTTAGGACAAACCGGGCA 240
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 TGGTATTTCTTCAGCCAAAGGGATCGGAAATATCCAACCGGTTTAAGAACAAACCGGGCA 240
Query 241 ACAGAAGCTGGTTACTGGAAAACCACCGGGAAAGATAAAGAAATATACAGAAGTGGAGTG 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ACAGAAGCTGGTTACTGGAAAACCACCGGGAAAGATAAAGAAATATACCGAAGTGGAGTG 300
Query 301 TTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCCAAAGGTGAGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCCAAAGGTGAGAAA 360
Query 361 AGCAATTGGGTTATGCATGAGTACAGGCTTGAGAGCAAACAACCTTTCAACCCCACAAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 AGCAATTGGGTTATGCATGAGTACAGGCTTGAGAGCAAACAACCTTTCAACCCCACGAAT 420
Query 421 AAGGAGGAATGGGTAGTGTGTAGGGTTTTCGAAAAGAGCACGGCAGCAAAGAAAGCACAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGAGGAATGGGTAGTGTGTAGGGTTTTCGAAAAGAGCACGGCAGCAAAGAAAGCACAA 480
Query 481 GAACAACAACCTCAATCTTCTCAACCATCTTTTGGATCTCCATGCGATGCAAACTCATCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAACAACAACCTCAATCTTCTCAACCATCTTTTGGATCTCCATGCGATGCAAACTCATCA 540
Query 541 ATGGCAAATGAGTTTGAAGATATTGATGAGCTTCCCAATCTGAATTCAAACTCATCAACC 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 ATGGCAAATGAGTTTGAAGATATTGATGAGCTTCCGAATCTGAATTCAAACTCATCAACC 600
Query 601 ATCGATTACAATAATCATATCCATCAATATTCGCAACGCAATGTTTACTCAGAAGACAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGATTACAATAATCATATCCATCAATATTCGCAACGCAATGTTTACTCAGAAGACAAC 660
Query 661 ACTACAAGTACGGCTGGTCTCAACATGAACATGAACATGGCTAGTACTAATCTTCCGTCT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 ACAACAAGTACGGCTGGTCTCAACATGAACATGAACATGGCTAGTACTAATCTTCAGTCT 720
Query 721 TGGACAACAAGTCTACTTGGTCAGCCTTTATCTCCAATCAACTCTTTGTTGCTCAAGGCT 780
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGACAACAAGTCTCCTTGGTCCGCCTTTATCTCCAATCAACTCTTTGTTGCTCAAGGCT 780
Query 781 TTCCAAATTAGGAACTCTTATAGTTTCCCAAAAGAGATGATCCCCAGTTTCAATCATTCT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCCAAATCAGGAACTCTTATAGTTTCCCAAAAGAGATGATCCCCAGTTTCAATCATTCT 840
Query 841 TCTCTTCAACAAGGAGTCTCCAATATGATCCAAAATGGTTCAAGTTCGTCTCAAGTGCAA 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 TCTCTTCAACAAGGAGTCTCCAATATGATCCAAAATGCTTCAAGTTCGTCTCAAGTGCAA 900
Query 901 CCCCAACCGCAAGAGGAAGCGTTTAATATGGACTCCATATGGTGA 945
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCCCAACCGCAAGAGGAAGCGTTTAATATGGACTCCATATGGTGA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5