BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904826

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16140.1 | Symbols:  | transposable element gene | chr2:7005...   100    5e-21


> AT2G16140.1 | Symbols:  | transposable element gene | chr2:7005823-7008272 
FORWARD LENGTH=2450
Length=2450

 Score =  100 bits (54),  Expect = 5e-21
 Identities = 68/75 (91%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  109  TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACAATCTAGAAGCCAATCCGTATGAT  168
            ||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| ||||
Sbjct  856  TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACACTTTGGAAACCAATCCGTGTGAT  915

Query  169  GATGTCCCTGTCTTT  183
            ||||| ||| |||||
Sbjct  916  GATGTTCCTATCTTT  930



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5