BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904843
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18670.1 | Symbols: | Ankyrin repeat family protein | chr3:... 2706 0.0
> AT3G18670.1 | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471
REVERSE LENGTH=1797
Length=1797
Score = 2706 bits (1465), Expect = 0.0
Identities = 1678/1782 (94%), Gaps = 10/1782 (1%)
Strand=Plus/Plus
Query 1 ATGGATACCGAAAAAGGTTATCCAAGAGGTTTCAGAGCAGACAGTCTACGAACAGAAACA 60
||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1 ATGGATACCGAGAAAGGTTATCCCAGAGGTTTCAGAGCAGAGAGTCTACGACCAGAAACG 60
Query 61 GGCCGCATAAGTTTTCGATCAGATAGTATGCAGATCGATGAAGCAGCCGAGCTACCACAA 120
|||| || ||| ||||| | ||||||||||||||||||||||||||||| |||| | ||
Sbjct 61 GGCCCCAGAAGCTTTCGGTTTGATAGTATGCAGATCGATGAAGCAGCCGATCTACAAAAA 120
Query 121 GGCGAGATACGACAAGAGAACTCGACCTATCTTGTCCTTTTCAAGAACATAGACAGTGGA 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GACGAGATACGACAAGAGAACTCGACCTATCTTGTCCTCTTCAAGAACATAGACAGTGGA 180
Query 181 AACTTGGAAGCGACGAAAGAGTTCTTGGACCGAAACCCTGAGGCTTTAACCGCAAGCTTA 240
| |||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 181 GAGTTGGAAGCCACGAAAGACTTCTTGGACCGAAACCCTGAAGCTTTAACCGCAATCTTA 240
Query 241 ACCTCTAACGGAGACACACCAATCCATAAAGCTGTTCTGTCGGGTCACATCAAGATCGTG 300
|||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ACCTCTAATGGAGACACTCCAATCCATAAAGCTGTTTTGTCGGGTCACATCAAGATCGTG 300
Query 301 GAAGAGATCATTAGAAGAATTCATGATCCAAAGCAAGTGTTAAAGATCAAGAACGATAAT 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GAAGAGATCATTAGAAGAATTCATGATCCAGAGCAAGTGTTAAAGATCAAGAACGATAAT 360
Query 361 GGTTACACAGCGCTTAGTTATGCTGCCACTGGTGGGATTGTGAGAATTGCAGAGTGTTTG 420
||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 GGTTATACAGCGCTTACTTATGCTGCCACTGGTGGAATTGTAAGAATTGCAGAGTGTTTG 420
Query 421 GTGAAT-AGATGTCCCGGTTTGGTTAGTGTTCGGAATGCGAAAGAGCATATACCAATCGT 479
|||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 421 GTGAATAAG-TGTCCTGGTTTGGTCAGTGTTCGGAATGCGAAAGAGCATATACCGATCGT 479
Query 480 GGTGGCTTCGTTGTACGGTCACAAACATCTGGTTGAGTATCTTTACAATCACACACCTCT 539
||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 480 GGTGGCTTCATTGTACGGTCACAAACATTTGGTTCAGTATCTTTACAGTCACACACCTCT 539
Query 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGTGATCTTGATCCTTGTGATGATTCAGATGAACACAAGGGCAAGAACGGAGCGATGCT 599
Query 600 CGTGACAAATTGTATTGTAGATGGATTATATGGTATTGCTTTGGATCTGATTCAGAGGTA 659
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CGTGACAAATTGTATTGTCGATGGATTATATTGTATTGCTTTGGATCTGATTCAGAGGTA 659
Query 660 TCCTAAGTTGGCTTATACTCGAGACAGCGATAACGATACAGCGATTATCGCGCTTGCTCA 719
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 660 TCCTAAGTTGGCTTATACTCGAGACAGTGATAACGATACAGCGATCATGGCGCTTGCTCA 719
Query 720 AACGCCTCATGCGTTCCCCAGTGTTCCACACATAATTAGACGTGTATACAAACTGAAGCT 779
||| ||| ||||||| || || ||||||| |||||||||||||||||||||||| |||||
Sbjct 720 AACACCTTATGCGTTTCCTAGCGTTCCACGCATAATTAGACGTGTATACAAACTAAAGCT 779
Query 780 AGGACATGCTCAAGCCAAAGAAATACTAGACTGTATCTGCCAAGAGATACCAAAATTTGA 839
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 AGGACATGCTCAAGCTAAAGAAATACTAGACTGTATCTGTCAAGAGATACCTAAATTTGA 839
Query 840 CGCGGCCCAACAGAAGAACGCTGGCCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CGCGGCTCAACAAAAGAACGCTGGTCTAAACCAAGCTCTCTTTAAGGCGGTAGAGAATGG 899
Query 900 TATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTTCAAAGA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 900 AATCGTAGAGTATATCGAGGAAATGATGAGGCATTATCCTGATATCGTATGGTCCAAAAA 959
Query 960 TAATTA-TGGTCTTAACCTCTTCTTCTACGCGGTAAGCCAGAGACAAGAGAAGATCTTTA 1018
|| | | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TAGT-AGTGGTCTTAACATCTTCTTCTACGCGGTAAGCCAGAGACAAGAAAAGATCTTTA 1018
Query 1019 GCCTCATTTACAATATGGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACAAACTCC 1078
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1019 GCCTCATTTACAATATAGGTGCTAAGAAGAACATCCTCGCTACAAATTGGGACATATTCC 1078
Query 1079 ATAACAATATGCTTCATCATGCCGCTTATCGAGCCCCAGCCTCACGGCTTAATCTCATTC 1138
||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||
Sbjct 1079 ATAACAATATGCTTCATCACGCCGCGTATAGAGCCCCAGCCTCAAGGCTTAATCTCATTC 1138
Query 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTCAAGGAAGTGGAGAGGTTAG 1198
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1139 CTGGTGCAGCTCTTCAGATGCAAAGGGAACTACAATGGTTTAAGGAAGTGGAGAAGTTAG 1198
Query 1199 TGCAACCGAAGCATCGGAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGCAACCGAAGCATCGAAAAATGGTTAACTTGAAGCAGAAGAAAACTCCAAAGGCTCTGT 1258
Query 1259 TTACAGACCAACACAAGGACCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAG 1318
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTACAGACCAACACAAGGATCTCGTGGAGCAAGGAGAGAAATGGATGAAAGAAACAGCAA 1318
Query 1319 CTTCTTGCACAGTCGTAGCCGCTCTAATCACCACAATGATGTTTTCCTCGGCGTTTACTG 1378
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1319 CTTCTTGCACAGTCGTTGCCGCTCTAATCACCACAATGATGTTTTCCTCCGCCTTTACTG 1378
Query 1379 TCCCCGGAGGTTACCGTTCAGATGGCATGCCACTCTACATCCACAAGCACATG-TTTAAG 1437
|||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||
Sbjct 1379 TCCCCGGAGGTTACCGTTCAGACGGCATGCCACTCTACATCCACCAGCACA-GATTTAAG 1437
Query 1438 ATTTTCCTCATCTCCGACGCTATCTCTCTTTTCACATCATGTATGTCTCTCCTCATGTTC 1497
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 ATATTCCTCATCTCCGACGCTATCTCTCTTTTCACCTCATGTATGTCTCTCCTCATGTTC 1497
Query 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGACTTTCTTCGATCACTTCCGACAAAA 1557
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1498 CTCGGCATTCTCAAGTCTCGCTACCGTGAAGAGGATTTTCTTCGATCACTTCCGACAAAA 1557
Query 1558 CTGATCGTGGGTCTTTTTTCTTTGTTTCTGTCGATGGCGACAATGATGGTGACTTTTGTC 1617
||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1558 CTGATCGTGGGTCTTTTGGCTTTGTTTCTTTCGATGGCGACGATGATTGTGACTTTTGTC 1617
Query 1618 GTGACACTCATGACTTTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GTGACGCTCATGACTCTGGTTGGAGAGAAAATCTCGTGGGTTTCGGCTCAATTTATGTTT 1677
Query 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTTCTTCAGTTTCCGGTTTTACTTGAGATC 1737
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1678 CTTGCGGTGATTCCGCTGGGGATGTTCGTTGTCCTTCAGTTTCCGGTGTTACTTGAGATC 1737
Query 1738 TTCTGCTCGACTTATT-TCCCTAGA-GTTTTTGATAAGCCTC 1777
||| || | ||||||| ||| || | ||||||||||| ||||
Sbjct 1738 TTCCGCGCCACTTATTGTCC-TA-ACGTTTTTGATAAACCTC 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5