BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904852
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18770.1 | Symbols: | Autophagy-related protein 13 | chr3:6... 2937 0.0
> AT3G18770.1 | Symbols: | Autophagy-related protein 13 | chr3:6459884-6463059
REVERSE LENGTH=2343
Length=2343
Score = 2937 bits (1590), Expect = 0.0
Identities = 1801/1899 (95%), Gaps = 30/1899 (2%)
Strand=Plus/Plus
Query 1 ATGTCATCTTCACACAACAGGAGT---AACAACAATTCAGAAGGTGCTAAAGCAGAACAA 57
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 324 ATGTCATCTTCACACAACAGGAGTAACAACAACAATTCAGAAGGAGCTAAAGCAGAACAG 383
Query 58 ATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAGTCAAGGACTCCTTTT 117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 ATCATATTTGAGTTCTTTGCTAAAAGCCTTCACATCATTCTCGAATCAAGGACTCCTTTT 443
Query 118 ATGTCTTCAAGGAATTTTAGTGGTGACCAGATGATTTGTTCTCCTTCCTCATCTTCTTCC 177
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 444 ATGTCTTCAAGGAACTTTAGTGGTGAGCAGATGATTTGTTCTCCTTCCTCATCTTCTTCC 503
Query 178 TCTTCCTCGAGTGTCAGGCCTCGCGACAAATGGTTCAATCTAGCTCTTAGGGAATGCCCT 237
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 504 TCTTCCTCGAGTGTTAGACCTCGAGACAAATGGTTCAATCTAGCTCTTAGGGAATGTCCT 563
Query 238 GCAGCGTTAGAGAGTTTTGATATCGGGCGGAGAAGTAGTCTTGAGCCTTTGGTTGTTGAT 297
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 564 GCAGCTTTAGAGAGTTTCGATATCGGGCGGAGAAGCAGTCTTGAGCCTTTGGTTGTTGAT 623
Query 298 GTGGTTCTTGTGGTGAGGCCGCTTGTTGGTGATCAGATGAACTTGTCTGGTAAAAGGGAG 357
|| ||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 624 GTTGTTCTTGTGGTGAGGCCACTTGTTGGTGATC------A---GTCTGGTAAAAGGGAG 674
Query 358 CTTATCAGGAATTTTTCCGGGAAAGATTATCAGTCGGGTTGGAATTCTGATCAAGATGAA 417
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 675 CTTATCAGGAACTTCTCCGGGAAAGATTATCAGTCTGGTTGGAATTCTGATCAAGATGAA 734
Query 418 TTGGGATGTGAAG-CTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAGTATGATAA 476
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 735 TTGGGATGTG-AGACTAAGAACGAGCAGATTATTGAGAGATGGGTGGTGCAATATGATAA 793
Query 477 TAGGAAGATCAGGGAATCTGTTACTACCAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCA 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 794 TAGGAAGATCAGGGAATCTGTTACTACTAGTAGCAGGAGGTCAAGCAGTAATAAGTTGCA 853
Query 537 AGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTGATGGTTAGGCTTTT 596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 854 AGTGATGTATAAGAAAGCTACTCTGCTGCTTAGATCATTGTTTGTCATGGTTAGGCTTTT 913
Query 597 ACCTGCTTATAAGATTTTCCGGGAACTTAATTCCTCAGGGCAGATCTTCAAGTTCAAGCT 656
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 914 ACCTGCTTATAAGATTTTTCGGGAACTCAATTCCTCGGGGCAGATCTTCAAGTTCAAGCT 973
Query 657 TGTTCCCAGGGTTCCC-TCTATTGTTGAGCCATTCACTCGTAGAGAAGAGGCAGAAATGC 715
|||||| |||| |||| ||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 974 TGTTCCTAGGG-TCCCTTCTATAGTTGAGCCATTCACTCGTAAAGAAGAAGCAGAAATGC 1032
Query 716 AGAAGTTTTCTTTCACACCGGTTGAAACTATCTGTGGTAGACTTTGCTTATCGGTTTTAT 775
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1033 AGAAGTTTTCTTTCACACCGGTTGAAACGATCTGTGGTAGACTTTGCTTATCGGTTTTAT 1092
Query 776 ATCGTTCTCTTTCCGATGTCAGTTGCGAACACTCAACTCCTATGTCTCCAACATTTATAA 835
|||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1093 ATCGTTCTCTCTCAGATGTCAGTTGCGAACACTCTACACCTATGTCTCCAACATTTATAA 1152
Query 836 CCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CCGATTATGTTGGAAGTCCCTTGGCTGATCCTTTAAAGAGGTTCCCTTCCCTTCCTCTTT 1212
Query 896 CATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGACATAGCTGGAGTTTCGATCGTT 955
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1213 CATATGGTTCTCCTCCATTGCTGCCATTTCAAAGGCGCCATAGCTGGAGTTTCGATCGTT 1272
Query 956 ACAAGGCATCCCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCAGATTCACATG 1015
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1273 ACAAGGCATCTCCACCTTCTGTTTCTTGCTCACCATCGCCTACACGCTCGGATTCACATG 1332
Query 1016 CATTGGTTTCACATCCTTGCTCCCGTCACCTTCCTCCTCACCCTTCTGATATACCCACTG 1075
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1333 CATTGGTTTCACATCCTTGCTCTCGTCATCTTCCTCCTCACCCTTCTGATATACCCACTG 1392
Query 1076 GTCGTAGGAAGGAATGCTATGCTGAAG-GATATCCTCCTTCTCAAGATTTCTCCCCTCCT 1134
|||||||||||||| |||| | |||| | ||| |||||| |||||||||||||||||||
Sbjct 1393 GTCGTAGGAAGGAAAGCTACCCCGAAGAG-TATTCTCCTTGTCAAGATTTCTCCCCTCCT 1451
Query 1135 CCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 CCTTCTCCTTCAGCACCAAAACACGCCGTCCCAAGAGGCATCACACGTACTGAAAGTGCT 1511
Query 1195 CCAGTCAGAATCCCAGCTCCAACTTTCCAGCCCAAAGAAAACGTTGTGGCACCTTCTGCT 1254
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1512 CCAGTCAGAATACCAGCTCCAACTTTCCAGTCCAAAGAAAACGTTGTGGCACCTTCTGCT 1571
Query 1255 CATCTGAAATTGTCGAGACACCCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAA 1314
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CATCTGAAGTTGTCGAGACACGCTTCGTTGAAGCCTGTGAGAAACTTGGGTCCTGGTGAA 1631
Query 1315 TCTGGAGGAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGAAATTCT 1374
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1632 TCTGGAGCAGCAATAGATAAGCTGTTTCTTTATGGGAGAGATGACTTTAGAAGACCTTCT 1691
Query 1375 GGGGTGAGGCCGTCTGCCAACAGCTCACCGCGGATATCATTTTCCCGGAGTTCCAGTAGA 1434
||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 1692 GGGGTGAGGCCGTCTTCCAGCAGTTCTCCGCGGATATCATTTTCCCGGAGTTCCAGTAGA 1751
Query 1435 TCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGAT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 TCTTTCCAAGACGATTTTGATGATCCTGATTTCCCTTGCCCATTTGATGTTGAGTATGAT 1811
Query 1495 GATATTACAGATCGTAATAGCAGACCAGGGTCGTTCGACCACAGAGGAGACATACACGAA 1554
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1812 GATATTACAGATCGGAATAGCAGACCAGGGTCGTTTGACCACAGAGGAGACATACATGAA 1871
Query 1555 CCACTCGATTCAAGTGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTT 1614
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 CCATTCGATTCAAGCGGGTCATACCCGAAGAAGTCCCAAGATGCTGCAGTTGGTGCCCTT 1931
Query 1615 GTGAGAATGCTGAAGAAAGCTCCTCCTCTCAGACAAGATGTCTCTGAATCTTCCATACCT 1674
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 1932 GTGAGAATGCTGAAGAAAGCGCCACCTCTCAGACAAGATGTCTCTGAATCTTCCAGACCT 1991
Query 1675 GAAATTTGCTGGAACAACAACAACAGCAACAAACCAGCAGGGGCTCACGAGATAGCAGTA 1734
|||||||||| |||||||||||| | | | | ||||||||||| ||||||||||||
Sbjct 1992 GAAATTTGCTCGAACAACAACAA-A-C--C---C--GCAGGGGCTCATGAGATAGCAGTA 2042
Query 1735 GCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCATTGGAA 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2043 GCGTCTATCACAGCCTCGGGGATTGCTCTGGCCTCAAAGACAACAGCTGATGCTTTGGAA 2102
Query 1795 GAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTAGTCAATCCACATCAAAC 1854
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2103 GAGTTGAGGTCTTACAAAGAAATGAAGAATCATTTGTTGCTTGGTCAATCCACATCAAAC 2162
Query 1855 CCTTCCTCGGTTACTA---CTTCACCTTTTGAAGTTTGA 1890
|||||||||||||||| ||||||| ||||| ||||||
Sbjct 2163 CCTTCCTCGGTTACTATTACTTCACCCTTTGATGTTTGA 2201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5