BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904884
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19090.1 | Symbols: | RNA-binding protein | chr3:6601466-66... 2239 0.0
> AT3G19090.1 | Symbols: | RNA-binding protein | chr3:6601466-6603709
FORWARD LENGTH=1368
Length=1368
Score = 2239 bits (1212), Expect = 0.0
Identities = 1316/1368 (96%), Gaps = 0/1368 (0%)
Strand=Plus/Plus
Query 1 ATGGCACAGATGCAGCGAGAAGAAGTAGAGTCAGTCACGACGGAGAAGAAAGGATTAGAC 60
||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGAC 60
Query 61 GGAGGTGGCGGATCTTCAGGCTCTCAGGCGACGGCGTTCAAATTCAACGCTCAGGCGCCG 120
||||| || |||||||| ||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 61 GGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCG 120
Query 121 GAATTTGTACCACGATCACATACCACCGCACCAGCAACGCAGGTTTCTCCGGTATCCGGT 180
||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 121 GAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGT 180
Query 181 TACTTTTATCCTTGTTTCCATTACAACGGCGGTTGCATAGGAGGATGCGGCGGAGGAGTC 240
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 181 TACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTC 240
Query 241 TGCGGTGGTGGAGGAACCGGCGTTGGTACTCAATCGTCGGACTGGATCTACGTGGGAGGA 300
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 TGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGA 300
Query 301 GGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCGGCTGCTGCGTTTTTCATTTCG 360
|||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 301 GGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCG 360
Query 361 AATCCGGCGGTTCAGTTTCCGGCTAACCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTT 420
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTT 420
Query 421 TCCGATGATCTCCGTCTTAAGATCGTCAAACAGGTTGAGTACCAATTTACTGACATGAGT 480
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 421 TCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGT 480
Query 481 CTCCTAGCCAACGAGTCTATTTCAAAGCATATAAGCAAAGATCCTGAAGGTTATGTGCCC 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCC 540
Query 541 GTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAACCACCACCTAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTT 600
Query 601 TCACTTGCTCTACGCTCCTCTTCAAAGCTTGTTGTGAGTGAAGATGGTAAGAAAGTTAAG 660
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 601 TCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAG 660
Query 661 CGTACAAGTCCATTTACTGATAGAGACAGAGAGGAATTGCAGGGCAGGACTGTCGTTGCA 720
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCA 720
Query 721 GAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGA 780
Query 781 AACGTCAAAGCGATTCGTATCTGTCATCCTCCAGAATCCAACTCCTCTCGTCCAAAAGGC 840
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGC 840
Query 841 GATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCG 900
Query 901 GATAAAGCAGTGGAGAAGCTGAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGG 960
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGG 960
Query 961 CTGCTTCTTAGATGCTCACCCAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATT 1020
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATC 1020
Query 1021 CTCATCGATGATGAACTTCCTTCTTATGAATCTGGAGAAGACTCTCCGCGTCTCCATTTA 1080
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 CTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTA 1080
Query 1081 ACCGAATCACAGCTTGATAACGACGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAA 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAA 1140
Query 1141 GGGAGAGGAAAAGGACGAGAACGATCCCCAAGAAGCTACGCTGTAGGAGGAGGAGGGCGT 1200
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 1141 GGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGT 1200
Query 1201 AGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCGAGCCTGGGCTCACACGAATCT 1260
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1201 AGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCT 1260
Query 1261 TCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACC 1320
Query 1321 ATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAA 1368
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5