BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904901

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   784    0.0  


> AT3G22530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; 
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G14830.1); 
Has 77 Blast hits to 77 proteins in 12 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977604-7978635 
REVERSE LENGTH=1032
Length=1032

 Score =  784 bits (424),  Expect = 0.0
 Identities = 481/508 (95%), Gaps = 5/508 (1%)
 Strand=Plus/Plus

Query  1    ATGAGAGTCCACCCAATTCCCAGAAACCTCAACAACACTTTGATCCATCATCATCATCAT  60
            |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  359  ATGAGAGTGCACCCAATTCCCAGAAACATCAACAACACATTGATCCATCATCATCATCAT  418

Query  61   AACCCGACCCGAGAACCCGGAAAGAATCTCCGGCGATTGCCACATATCTTCAACCGTGTT  120
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  419  AACCCGACCCGAGAACCCGGAAAGAATCTCCGACGATTACCACATATCTTCAACCGTGTT  478

Query  121  CTGGAGCTGCCATTGAGGTCAGAGGCAGATGTAACAGTGGAAGAGAGACACGACTGTTTT  180
            |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct  479  CTGGAGCTACCATTGAGGTCAGAAGCAGATGTAGCAGTGGAAGAGAGACACGACTGTTTT  538

Query  181  CGATTCGTGGCGGAGACGGTAGGTCTTTGTGGCGGTGATGGAGAAATGAGGGCTTATATG  240
            ||||| |||||||||||||||||||| |||  ||| ||||||||||||||||||||||||
Sbjct  539  CGATTTGTGGCGGAGACGGTAGGTCTCTGTAACGGCGATGGAGAAATGAGGGCTTATATG  598

Query  241  GTTGAGATTCATCCTGGTATAACCAAGATTGTTGTTAGGACAAATGGGTCGTCTTCTCTT  300
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct  599  GTTGAGATTCATCCTGGTATAACCAAGATCGTTGTGAGGACAAATGGGTCTTCTTCTCTT  658

Query  301  GGTTTGTCTTTAGACGAGTTAGAGCTTGACGTGTGGCGTTTTAGGCTACCGGAATCTACT  360
            ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct  659  GGTTTGTCTTTAGACGAATTAGAGCTTGACGTGTGGCGTTTTAGGTTACCGGAATCAACT  718

Query  361  AGGCCTGAGCTTGTTACTGTGGCTTGTGTTGATGGAGATTTGATTGTTACTGTGCCTAAG  420
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  719  AGGCCTGAGCTTGTTACTGTTGCTTGTGTTGATGGTGATTTGATTGTTACTGTGCCTAAG  778

Query  421  AATGCTGAAGAAGAAGATGATGATGATGATGGTGGTGGTGATTTTGGACAAGGTATGGGT  480
            |||||||||||||||||||||||||  | ||||||||||||||||||||||||||| |||
Sbjct  779  AATGCTGAAGAAGAAGATGATGATG--G-TGGTGGTGGTGATTTTGGACAAGGTATTGGT  835

Query  481  AGTGGAAGG-TTGGTGCTTGTTCAGTGA  507
            ||||||||| ||| ||||||||||||||
Sbjct  836  AGTGGAAGGCTTG-TGCTTGTTCAGTGA  862



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5