BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904903
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19250.1 | Symbols: | Protein of unknown function (DUF677) ... 1652 0.0
AT3G19330.1 | Symbols: | Protein of unknown function (DUF677) ... 990 0.0
> AT3G19250.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:6666842-6668395 REVERSE LENGTH=1470
Length=1470
Score = 1652 bits (894), Expect = 0.0
Identities = 1020/1083 (94%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 1 ATGCCGCACTGTTTTACCTTCAAGCCACCTTCTGCGGAGGCCTCTCTCGCCGACGACCCT 60
||||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||| |
Sbjct 388 ATGCCGCACTGTTTTACCTTCAAGCCAGCTTCTCCAGAGGGCTCTCTCGGCGACGACCAT 447
Query 61 CTTCCCCATTCTTCTCCAGAGGGTAGTGTGGCCTCCACTTTTAACATCAGCCTCGAGTTG 120
||||||||| |||| |||||||| ||||| ||||||||||||||| |||||| ||||||
Sbjct 448 CTTCCCCATCCTTCCCCAGAGGGAAGTGTTGCCTCCACTTTTAACCTCAGCCACGAGTTA 507
Query 121 GCTCACGCTTTTCAAACCTCTTCCTACCATGATATACGTTCACGGCTTCTTGCGGTTGAC 180
||||| |||||||||||| | || ||||| || ||||||||||||||||||| |||||
Sbjct 508 GCTCATGCTTTTCAAACCCCGTCGTACCACGACATACGTTCACGGCTTCTTGTTATTGAC 567
Query 181 CCAACACAAGAAAATCTCGAGCTGTTTCTCTCTCAAGAGCTCAAACCAAACAATGAATGC 240
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |
Sbjct 568 CCAACACAAGAAAATCTCGAGCTGTTTCTTTCTCAAGAGCTCAGACCAAACAACGAATCC 627
Query 241 GTTCAAGAAGCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTATCTCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 628 GTTCAAGAAGCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTGTCTCT 687
Query 301 ACTTACTTCCAACACAGCGAAGACGCTACCCGCTTTTGCTTGAATCTTTACCAAAACGTC 360
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 688 ACTTACTTCCAACACAGCGAAGACGCCACCCGATTTTGCTTGAATCTTTACCAAAACGTC 747
Query 361 CACAGTGCTCGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAAAATCTTTCCCCCT 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 748 CACAGTGCTCGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAATATCTTTCCCCGT 807
Query 421 GATTCCCATTCCGCCATTGACGAGTCCTTCTGTAACTTAGCCTTCGATGTTTTCCTTAAG 480
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 808 GATTCCCATTCCGCAATTGACGAGTCCTTCTGTAACTTAGCATTCGACGTTTTTCTTAAG 867
Query 481 CTTGACACGTTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTTGACACGTTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAA 927
Query 541 TTATGCTTTTATCAGCTGGCTGACAAGCTGGACACCCGTATCCGTAAGTCTAAGTCACGG 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 928 TTATGCTTTTATCAGCTGGCTGACAAGCTGGACACCCGTATTCGTAAGTCTAAGTCACGG 987
Query 601 GTCCGCCTCCTCCATCATGCCACAGCTGGTTCTGCCTTATGTCTTGTTACTGCTGTTGTT 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 988 GTCCGCCTCCTCCATCATGCCACAGCTGGTTCTGCCTTATGTCTTGTAACTGCTGTTGTT 1047
Query 661 GCGGTTGCTGCTTCTGCGGCTTTTATCGCCTATCATGCACTTCCAACCCTTGTTGTTGTT 720
| |||||||||||||||||| |||||||| |||||||||||||| ||| || ||||||||
Sbjct 1048 GTGGTTGCTGCTTCTGCGGCATTTATCGCATATCATGCACTTCCCACCATTCTTGTTGTT 1107
Query 721 GCAGGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGGAGGAGTTATCTAAC 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1108 GCAGGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGAAGGAGTTGTCTAAC 1167
Query 781 ATTTCTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACC 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 ATTTTTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACC 1227
Query 841 ATTGACCGTCTTGTCTCCCGTTTGCACACGGGGATTGAAAACGACAAGCTTCTCATTCGA 900
||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 1228 ATTGACCGTCTTGTCTCCCGTTTGCACACGGGGGTTAAAAACGACAAGCTTCTTATTCGC 1287
Query 901 CTTGGATTGGAGAGGGGGAGGGACGTGTATTCAGTTCAGGAGTTTGTGAAACAGCTTCGC 960
|||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 1288 CTTGGATTAGAGAGGGGGAGGGACGTGTATACAATTCCGGAGTTTGTGAAACAGCTTCGA 1347
Query 961 AAGAGCCACGTTAACCTCACCCAGCAACTCAAGGTTCTTGAGGATCATATTTGTCGTTGG 1020
|||||||| ||||||| |||||| |||||| ||||||||| ||||||||| |||||||||
Sbjct 1348 AAGAGCCATGTTAACCACACCCATCAACTCGAGGTTCTTGTGGATCATATATGTCGTTGG 1407
Query 1021 TTCACTAACGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCCCCAAACG 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TTCACTAATGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCCCCAAACG 1467
Query 1081 TAA 1083
|||
Sbjct 1468 TAA 1470
> AT3G19330.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:6699341-6701300 FORWARD LENGTH=1497
Length=1497
Score = 990 bits (536), Expect = 0.0
Identities = 763/872 (88%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 199 GAGCTGTTTCTCTCTCAAGAGCTCAAACCAAACAATGAATGCGTTCAAGAAGCTCTTAGT 258
|||||| |||| ||||||| |||| ||||||| || ||||| |||||||||| | ||
Sbjct 338 GAGCTGCTTCTTTCTCAAGTGCTCCAACCAAATAAAGAATGTGTTCAAGAAG--C-TA-- 392
Query 259 CTTAGACACGCCAAGCAAACTACACTTACCAATCTTATCTCCACTTACTTCCAACACAGC 318
||||||||| |||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 393 -TTAGACACGTCAAGCAAACTACACTTACTAATCTCGTTTCTACTTACTTCCAACACAGC 451
Query 319 GAAGACGCTACCCGCTTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCTCGCTGCCAC 378
||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 452 GAAGACGCTACCCGCCTTTGCTTAAATCTTTACCAAAACGTACACAGTGCTCGCCACCAC 511
Query 379 CTCTACACACCCCTCTTAGACCTCTTCAAAATCTTTCCCCCTGATTCCCATTCC-GCCAT 437
|||||||| ||||| |||||||||||||| ||||||||| |||||| | | || |||||
Sbjct 512 CTCTACACGCCCCTTTTAGACCTCTTCAACATCTTTCCCGGTGATTCAC-TCCCCGCCAT 570
Query 438 TGACGAGTCCTTCTGTAACTTAGCCTTCGATGTTTTCCTTAAGCTTGACACGTTTGAAAA 497
|||||||||| | ||| || | || ||||| ||||| |||||||| ||||||||||||||
Sbjct 571 TGACGAGTCCCTATGTGACCTGGCATTCGACGTTTTTCTTAAGCTCGACACGTTTGAAAA 630
Query 498 CCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAATTATGCTTTTATCAGCT 557
||||||| |||||||||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct 631 CCCTTTCTCATCTCCTGAATCTTACAGCTTTCGAGACACCCAATTATGCTTCTCCCAGCT 690
Query 558 G--GCTGACAAGCTGGACACCCGTATCCGTAAGTCTAAGTCACGGGTCCGCCTCCTCCAT 615
| || | || ||||||| ||| | || ||||||| |||||||||||||||| ||||
Sbjct 691 GAAGC--ATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTCCGCCTCATCCAC 748
Query 616 CATGCCACAGCTGGTTCTGCCTTATGTCTTGTTACTGCTGTTGTTGCGGTTGCTGCTTCT 675
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 749 CATGCCACAGCTGGTTCTTCCTTATGTCTTGTTGCTGCTGTTGTTGCGGTTGCTGCTTCT 808
Query 676 GCGGCTT-TTATCGCCTATCATGCACTTCCAACCCTTGTTGTTGTTGCAGGTCCCTTGTG 734
|| | || |||| |||| |||||||||||| | |||| ||||||||||||||||||||||
Sbjct 809 GCAG-TTGTTATTGCCTCTCATGCACTTCCCATCCTTCTTGTTGTTGCAGGTCCCTTGTG 867
Query 735 CACTCCCTACCTCCCTCACAGTTTCAAGAAGGA-GGAGTTATCTAACATTTCTCAGCTAA 793
|| ||| |||||||||||||||||||||| | | ||||||| ||||||||| |||||| |
Sbjct 868 CAGTCCTTACCTCCCTCACAGTTTCAAGA-GAAAGGAGTTAACTAACATTTGTCAGCTCA 926
Query 794 ATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACCATTGACCGTCTTG 853
||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 927 ATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTTGATACCATTGACCGTCTTG 986
Query 854 TCTCCCGTTTGCACACGGGGATTGAAAACGACAAGCTTCTCATTCGACTTGGATTGGAGA 913
|||||||||||||||| || |||||| |||||||| || | |||||||||||||| ||||
Sbjct 987 TCTCCCGTTTGCACACTGGAATTGAATACGACAAGTTTTTAATTCGACTTGGATTAGAGA 1046
Query 914 GGGGGAGGGACGTGTATTCAGTTCAGGAGTTTGTGAAACAGCTTCGCAAGAGCCACGTTA 973
|||||||||||||| ||||| |||| ||| || |||||| |||||||||||||||| |
Sbjct 1047 GGGGGAGGGACGTGCATTCAATTCAAGAGATTCTGAAACTGCTTCGCAAGAGCCACCTCC 1106
Query 974 ACCTCACCCAGCAACTCAAGGTTCTTGAGGATCATATTTGTCGTTGGTTCACTAACGTTA 1033
||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1107 CCCTCACCCATCAACTCAAGGATCTTGAGGATCATATTTGCCTTTGGTTCACTAACGTTA 1166
Query 1034 ACAAATCCAGATCGTTGCTCCTTAA-AGAGAT 1064
||||| | |||||||||||||| || ||||||
Sbjct 1167 ACAAAGCTAGATCGTTGCTCCT-AACAGAGAT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5