BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904913

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19350.1 | Symbols: MPC | maternally expressed pab C-termina...   303    5e-82


> AT3G19350.1 | Symbols: MPC | maternally expressed pab C-terminal 
| chr3:6705493-6706127 FORWARD LENGTH=543
Length=543

 Score =  303 bits (164),  Expect = 5e-82
 Identities = 260/305 (85%), Gaps = 11/305 (4%)
 Strand=Plus/Plus

Query  44   ATTTACCTCCATATGATCTTGCTTCTTTACCTCCCGAAA-CACAACGAAAGATGATTGGT  102
            ||| |||||| | |||||||||||||||||||||| |||  ||||||| |  ||||||||
Sbjct  83   ATTCACCTCCTTTTGATCTTGCTTCTTTACCTCCC-AAAGAACAACGAGATTTGATTGGT  141

Query  103  GAGACTTTGTACCAAATGGTGGAAGAACTTGAGCCACGGTTTGCACCAAAAATCACAGGA  162
            || ||||||| |   |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  142  GAAACTTTGTTCTTTATGGTGGAAGAACTTGAGCCACAGTTTGCACCAAAAATCACAGGA  201

Query  163  ATGATTCTTGAACTGGACCAAGACAGGGTCTTTCATCTGATGG-AATCACCTGAAGCCCT  221
            |||||||||||| |||||||||||| |||| |||||||| ||| || ||||| ||||| |
Sbjct  202  ATGATTCTTGAATTGGACCAAGACAAGGTCCTTCATCTGCTGGTAA-CACCTAAAGCCTT  260

Query  222  CAAAGAAACTG-TCAAAGAGGCAATGAAGATCTTAGCGGACTGGATTCCGCAACAGATGC  280
            |||||||| || |||||||||||||| || || ||||| |||   ||| |||||||||| 
Sbjct  261  CAAAGAAA-TGGTCAAAGAGGCAATGGAGGTCCTAGCGCACTCCTTTCTGCAACAGATGA  319

Query  281  AACTA-CTAGGG-AAAGAAGATGCTT-GCAAGTTCCTAGCTTCCATGCTTCCTGCTAAAC  337
            || |  |||||| ||| |||||| || ||||||||||| |||||||||| || |||||||
Sbjct  320  AAATTGCTAGGGGAAA-AAGATG-TTAGCAAGTTCCTACCTTCCATGCTCCCCGCTAAAC  377

Query  338  TATGA  342
            | |||
Sbjct  378  TTTGA  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5