BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904926

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19460.2 | Symbols:  | Reticulon family protein | chr3:67473...   531    4e-150


> AT3G19460.2 | Symbols:  | Reticulon family protein | chr3:6747370-6749307 
FORWARD LENGTH=1517
Length=1517

 Score =  531 bits (287),  Expect = 4e-150
 Identities = 318/333 (95%), Gaps = 1/333 (0%)
 Strand=Plus/Plus

Query  67   GTTGCTGATTTGCTGCTATGGAGAAACCGGACCGGTGCAACCATTTTGCTAATCTCTTCT  126
            |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct  559  GTTGCTGATTTGCTGCTATGGAGAAACCGGACTGGTGCAGTCATTTTGCTAATCTCTTCT  618

Query  127  ACTGGGTTTTGGTTCTTATTTGAGATAGCTGGGTACAATCTTTTGTCTTTCGTCTCCAAT  186
            |||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||
Sbjct  619  ACTGGGTTTTGGTTCTTATTCGAGAGAGCTGGATACAATCTCTTGTCTTTCGTCTCCAAT  678

Query  187  GTTCTTCTTCTTCTCGTTGCCATCCTCTTCTTATGGGCCAAGTCTGCTACAGTACTCAAC  246
            ||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct  679  GTTCTGCTTCTTCTCGTTGCGATCTTCTTCTTATGGGCCAAGTCTGCTACAGTTCTCAAC  738

Query  247  CGACCGCTACCTCCAGTTCCGAATATGGAAATCCCTGAGGAGTTTGCGATTAAGGCTGCT  306
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  739  CGACCGCTACCTCCAGTTCCGAATATGGAAATCCCTGAGGAGTTTGCAAATAAGGCTGCT  798

Query  307  GATGATCTTCGGGTTTGGATCAATCATGTACTGTCAATTGCAAGTGATATCACCATAGCT  366
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  799  GATGATCTTCGGGTTTGGATCAATTATGTACTGTCAATTGCAAGTGATATCACCATAGCT  858

Query  367  AGAAATCCGATTCGTCTCCTTCAGGTTTCTCTT  399
            |||||||||||||||||||||||||||| ||||
Sbjct  859  AGAAATCCGATTCGTCTCCTTCAGGTTT-TCTT  890


 Score =  361 bits (195),  Expect = 5e-99
 Identities = 212/220 (96%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  388   CAGGTTTCTCTTGTCTTGTGGGCTATATCCTTTGTTGGGACTTTAATCAACTCCTTCACT  447
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  982   CAGGTTTCTCTTGTCTTGTGGGCTATATCCTATGTTGGGACTTTAATCAACTCCCTCACT  1041

Query  448   CTTGTTTACATTGGAGTTCTTCTCAGTCTTTCTTTTCCTCTCGTGTATGAGAAGTACCAA  507
             ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct  1042  CTTGTTTACATTGGAGTTCTTCTCAGTCTTTCTTTTCCTATTGTGTATGAGAAGTACCAA  1101

Query  508   GACCACATTGATGAGAAAGTGAACTCGACTTCTAAATTCGTTCGAAGTATCTCAAGGAAG  567
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1102  GACCACATTGATGAGAAAGTGAACTCGACTTCTAAATTCGTTCGAAATATCTCAAGGAAG  1161

Query  568   TTTCCGAT-GCCTATAAACAAAGAGAAGAAACATCAGTAG  606
             ||||| || ||| |||||||||||||||||||||||||||
Sbjct  1162  TTTCC-ATTGCCCATAAACAAAGAGAAGAAACATCAGTAG  1200


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 63/67 (94%), Gaps = 3/67 (4%)
 Strand=Plus/Plus

Query  1    ATGGGAGATTCCGTTTCTTCTTCTTCAACCCGCGTTTCTGTTCATCAATCTCTTGGTGCT  60
            |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct  231  ATGGGAGATTCCG--T-TTCTTCTTCATCCCGCGTTTCTGTTCATCAATCTCTTGGTGCT  287

Query  61   GGTTCTG  67
            |||||||
Sbjct  288  GGTTCTG  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29186039407


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5