BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904932
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19520.1 | Symbols: | Protein of unknown function (DUF626) ... 1081 0.0
AT1G28500.1 | Symbols: | Protein of unknown function (DUF626) ... 211 8e-54
AT1G23960.1 | Symbols: | Protein of unknown function (DUF626) ... 189 4e-47
AT1G27860.1 | Symbols: | Protein of unknown function (DUF626) ... 183 2e-45
> AT3G19520.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:6772687-6774445 FORWARD LENGTH=1261
Length=1261
Score = 1081 bits (585), Expect = 0.0
Identities = 740/813 (91%), Gaps = 17/813 (2%)
Strand=Plus/Plus
Query 4 GGATTTT-TCAG-TGGGCAGATGAATTACTGGCGTCAAATAGCCGAATCCGATGGTTTCG 61
||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 116 GGATTTTGT-AGATGGGCAGATGAAGTACTGGCGTCAAATAGCCGAATCCGATGGTTTCG 174
Query 62 ATATCAATGATGTTCCAGTACCAAGAGGAACCAGAGCTGGACTGTGGTCCGTCAACTGTC 121
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 175 ATATCGATGATGTTCCAGTACCAAGAGGAACCAGAGCTGGACTGTGGTCTGTCGACTGTA 234
Query 122 AACACCCACGTTTTAGGCTTAGGGCTTGTTTACCCAAGATTTATGCTATGGTTGGTCTTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AACACCCACGTTTTAGGCTTAGGGCTTGTTTACCCAAGATTTATGCTATGGTTGGTCTTC 294
Query 182 ACCATTACAATTTGCTCAAGGGGACAAACTTCCAGCACCATGACTTACTGAAATACAACA 241
||| |||||||||||||| ||||||||||||| |||||| ||| ||||| |||||||||
Sbjct 295 ACCGTTACAATTTGCTCAGGGGGACAAACTTCGAGCACCTTGAGTTACTAAAATACAACG 354
Query 242 AGTCAATGAACTGTGTACGCTCTTACTACATAACTTCGGTTGCTGTAGATCTTTCTAGCC 301
|||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 355 AGTCAATGAACTGTGTGTGCTCTTACTATATAACTTCGGTTGCAGTAGATCTTTCTAGCC 414
Query 302 AATTTCAGAAAACCTTTCAGATTCGAGTTGATGAAAAAAGTTATGGGGATTTGGATTTGA 361
| || |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 415 AGTTGCAGAAAACTTTTCAGATTCGAGTTGATGAAAAAAGTTTTGGAGATTTGGATTTGA 474
Query 362 CGGTCTCTATTGCTAGAATTAAAGATGAAGAGAAAGTGACCACAC-AGAAGCGTTTCATA 420
|||||||| |||||||| ||| |||||||||||||||||||| | ||||||||||||||
Sbjct 475 CGGTCTCTGTTGCTAGACCTAATGATGAAGAGAAAGTGACCAC-CGAGAAGCGTTTCATA 533
Query 421 CATCACTTTCATGGTGAAGCAGAC-GCGGATGATTTCTACCAAGGTGCATTGCCTGATTG 479
|||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 534 CATCACTTTCATTGTGAAGCAG-CTGCGGATGATTTCTACAAAGGTGCATTGCCTGATTG 592
Query 480 GCCATCAGTTGATGATTTTAATGATCAAAAACGATTTTACCTGGTGACTGAA-T-CAGAT 537
||| ||||||| |||| | ||| ||||||||||||||||| |||||| ||| | | ||
Sbjct 593 GCCGTCAGTTGGTGATCTGAATAATCAAAAACGATTTTACATGGTGAA-GAAATGC-GAG 650
Query 538 TTTCAATCCAATGATTGGATTCGTCTTTATTTG-AATCTTGCAGTTTGTGGACGTCGTAA 596
|| ||||||||||||||||| ||||| |||||| || ||||||||| ||| |||| | |
Sbjct 651 TTGCAATCCAATGATTGGATCCGTCTATATTTGGAA-CTTGCAGTTGGTGTACGTTATCA 709
Query 597 G-ATGACTTCAGAGAATGATTTGTCCAAGTTGCAGATTCTGAAAGTGGCAATAGAAACTA 655
| | ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 710 GCA-GACTTCAGAGAGTGATCTGTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTA 768
Query 656 AGGAAGAAGATTTGCAGCCACCGAGTAGGAGACTCAAGGCCAAAAGTGC-ATATGTCTAC 714
||||||||||| |||||||||||| ||||||||||||| |||||||| | | ||||||||
Sbjct 769 AGGAAGAAGATGTGCAGCCACCGAATAGGAGACTCAAGTCCAAAAGT-CTACATGTCTAC 827
Query 715 ATAACATTTAAGGGCTTGGACAGGGCTCCGATTGGTGATGAGATTGGTGAGCATGTTGAA 774
||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 828 ATAACGTTTAAGGGCTTGGCCAAGGCTCCTATTGGTGATGAGATTGGTGAGCATGTTGAA 887
Query 775 CGCAAAGCTATCGTTAGAAGAGTCATTGATGAG 807
||||||||||| ||| |||||||||||||||||
Sbjct 888 CGCAAAGCTATAGTTCGAAGAGTCATTGATGAG 920
> AT1G28500.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:10018691-10020350 FORWARD LENGTH=981
Length=981
Score = 211 bits (114), Expect = 8e-54
Identities = 541/734 (74%), Gaps = 81/734 (11%)
Strand=Plus/Plus
Query 163 TATGCTATGGTT-GGTCTTCACCATTACAAT-TTGCT-CAAGGGGACAAACTTCCAGCAC 219
|||||| | ||| || ||||| | || |||| || | | ||||||||| ||| ||| |
Sbjct 193 TATGCT-TTGTTGGGGCTTCATCGTTTCAATATT-TTGC-AGGGGACAAGTTTCGAGCTC 249
Query 220 CATGACTTACTGAAATACAACAAGTCAATGAACTGTGTACG-C-TCTTACTACATAACTT 277
||| | ||| ||||| ||||||| |||||||| | |||| | || |||||||| ||||
Sbjct 250 GATGCCCTACAGAAATTCAACAAGACAATGAAC-CT-TACGTCTTCGTACTACATTACTT 307
Query 278 CGGTTGCTGTA-GA-TC--TTTCTA-GCCAATTT-CAGAAAACCTTTCAGATTCGAGTTG 331
| |||| | || | ||| || ||| ||||||||||||||| |||||||||
Sbjct 308 TGCTTGC-AAACGAGCCAGGAGCTATTCC--TTTGCAGAAAACCTTTCAGGTTCGAGTTG 364
Query 332 ATGAA--AAAAGTTATGGGGA-TTTGGATTTGACGGTCTCTATTGCTAGAATT---AAAG 385
||||| |||| ||| | | |||||||||||| ||| |||||||||| || ||||
Sbjct 365 ATGAACGAAAA--TAT-GACACTTTGGATTTGACAGTCGCTATTGCTAGGCTTAAAAAAG 421
Query 386 ATGAAGA-GAA-----AGTGACCA-CACAGAAGCGTTTCATACATCACTTTCATGGTG-A 437
|| || | ||| | ||||| || || ||| ||| ||| ||||||| || || |
Sbjct 422 ATCAAAATGAAGCGGCGGAGACCACCA-AGGAGCCCTTCGTACCTCACTTT--TGTTGTA 478
Query 438 -AGCAGACG-CGGATGATTTCTACCAAGGTGCATTGCCTGATTGGCCATCAGTTGATGAT 495
|||| | | |||| | ||| ||||||| |||||||||||||||| |||| ||||| |
Sbjct 479 GCGCAG-TGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGATGCT 537
Query 496 TT---TAATGATCA-AAAACGATTTTACCTGGTGACTG-AATCAGATTTTCAATCCAATG 550
|| | ||||| | ||| ||||||||| | | | | ||||||| | ||| ||| ||
Sbjct 538 TTGCGTCATGAT-AGAAACCGATTTTACGAGCT-AGAGAAATCAGAGTGGCAAGCCACTG 595
Query 551 ATTGGA-TTCGTCTTTATTT-GAA-TCTTGCAGTTTGT-G-GACGTCG-TA-A-G-ATGA 601
|||||| ||| ||||||||| ||| | ||| | ||| | | || | | || | | |||
Sbjct 596 ATTGGATTTC-TCTTTATTTGGAACTTTTG-A-TTT-TAGCAAC-T-GATAGAGGAATGT 649
Query 602 CT--T-CA--G-AGAATGATTTGTC-CAAGTTGCAGATTCTGAAAGTGGCAATAGAAACT 654
| | | | ||| || | || | || ||| |||||||||||||||| || ||||||
Sbjct 650 TTGGTGTAGCGCAGACTGGTCTGCCTCAGGTT-CAGATTCTGAAAGTGGTGATTGAAACT 708
Query 655 AAGGAAGAAGATTTGCAGCCACC--GAGTAGGAGACTCAAGGCCAAAAGTGCATATGTCT 712
|||||||| || | |||| || || || ||||||||| |||| ||| ||| ||||||
Sbjct 709 GAGGAAGAAAATGAGAAGCC-CCTGGA-TAAGAGACTCAATGCCAGAAGGGCACATGTCT 766
Query 713 ACATAACATTTAAGGGCTTGGACAGGGCTCCGA-TTGGTGATGAGATTGGTGAGCATGTT 771
| ||||| |||| ||||||| || | | || | | || |||||||||||||||||||
Sbjct 767 ATATAACTTTTACGGGCTTGCCCAAGTC-CCCACGTCTTGTTGAGATTGGTGAGCATGTT 825
Query 772 GAACGCAAAGCTATCGTTAGAAGAGTCATTGATGAGT-AT--TACTTTACTCTCCTGGGT 828
||||||||||||||| ||||||||||||| ||||| | | ||||| |||||||| |||
Sbjct 826 GAACGCAAAGCTATCATTAGAAGAGTCATCGATGATTCAGGATACTTGACTCTCCTTGGT 885
Query 829 GGGTTTTCGATTGG 842
||||| || |||
Sbjct 886 AAGTTTTGGAGTGG 899
> AT1G23960.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:8478407-8480316 REVERSE LENGTH=1256
Length=1256
Score = 189 bits (102), Expect = 4e-47
Identities = 451/609 (74%), Gaps = 65/609 (11%)
Strand=Plus/Plus
Query 163 TATGCTATGGTTGGTCTTCACCATTACAATTTGCTCAAGGGGAC-AAACTTCCAGCACCA 221
||||||| | |||| ||||| | ||||||| || | |||||||| ||| ||| || |
Sbjct 308 TATGCTAAGCTTGGGCTTCATCGTTACAATATGTTGAAGGGGACTAAA-TTCGAGTTCGG 366
Query 222 T-GACTTACTGAAATACAACAAG-T-CAATGAACTGTGTACG-CTCTTACTACATAACTT 277
| | | || |||||| ||||| | | ||| |||||||| | ||||| |||||||||||
Sbjct 367 TCG-CCTAATGAAATTCAACATGTTACAA--AACTGTGT-GGCCTCTTTCTACATAACTT 422
Query 278 CGGTTGCTGTA-GA-T-C--T-TT-CTAGC-CA--ATTTCAGAAAACCTTTCAGATTCGA 327
|| || || || | | | || || || || | || ||||||||||| |||||
Sbjct 423 TGGAAGC-ATACGATTACGGTGTTCCTGGCACATCACATCCTCAAACCTTTCAGGTTCGA 481
Query 328 GTTGATGAAAAAAGTTA-TGGGGA-TTTGGATTTGACGGTCTCTATTGCTAGAATTAAAG 385
|||||||||||| || | || | ||||||||||||||||||||||||||||| ||
Sbjct 482 ATTGATGAAAAAA--TATTTGGCAGTTTGGATTTGACGGTCTCTATTGCTAGAAG-AACT 538
Query 386 ATGAAGA-GAAAGTGACCACACA-GAAGCGTTTCATACATCACTTTCATGGTGAAGCAGA 443
| | || ||| |||||||| || ||||| ||||||||||||| |||||||| ||||
Sbjct 539 AC-A-GATGAA-GTGACCAC-CAAGAAGCCCTTCATACATCACTATCATGGTGGGGCAGT 594
Query 444 CGCGGATGAT-T--TCTACCAAGGTGCATTGCCTGATTGGCCATCAGTTGATGATTTT-A 499
|||||| || | ||| | |||||| ||||||||||||||| |||| ||||| |||| |
Sbjct 595 GGCGGATAATATCATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATG-TTTTGA 653
Query 500 ATGATCAAA-AACGATTTTACCTGGT---GACTGAATCAGATTTTCAATCCAATGATTGG 555
| || || | |||| |||||| || | || ||||||||| | | | | | || ||||
Sbjct 654 AAGA-CAGAGAACGTTTTTACGTGATTATGAATGAATCAGAGTGGCGAGCTACTGCTTGG 712
Query 556 ATT-CGTCTTTATTTG-AATCTTGCAGTTTGTGGACGTCG-TAAGATGACTTCAG-AGA- 610
||| | ||| |||||| || |||| | |||||| || | | |||| | | | || | |
Sbjct 713 ATTTC-TCTGTATTTGGAA-CTTGTACTTTGTGCACAT-GATAAGTTCA-T-CACTA-AT 766
Query 611 A-TGATTTGTCCAAGTTGCAG-ATTCTGAAAGTGGCAATAGAAACTAAGGAA-GAAGATT 667
| |||| ||||| |||| || ||| ||||||||| |||||||||| | | | ||||
Sbjct 767 ACTGATCTGTCCCGGTTG-AGTATTGAGAAAGTGGCGATAGAAACTA-GTATTGGAGAT- 823
Query 668 TGCAGCCACCGAGTAGGA--GACTCAAGGCCAAAAGTGCATATGTCTACATAACATTTAA 725
|| || | || || ||||| |||||||||||||| ||||||||||| |||||
Sbjct 824 -GC-GCTGTTG--TATGAAAGACTCGAGGCCAAAAGTGCAAATGTCTACATATGGTTTAA 879
Query 726 GGGCTTGGA 734
|||||||
Sbjct 880 ACGCTTGGA 888
> AT1G27860.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:9704558-9706238 REVERSE LENGTH=870
Length=870
Score = 183 bits (99), Expect = 2e-45
Identities = 317/417 (76%), Gaps = 35/417 (8%)
Strand=Plus/Plus
Query 448 GATGATTTCTACCAAGGTGCATTGCCTGATTGGCCATCAGTTGATGATTT---TAATGAT 504
|||| | ||| ||||||| |||||||||||||||| |||| |||| ||| | |||||
Sbjct 382 GATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGAAGATGCTTTGCGTCATGAT 441
Query 505 CA-AAAACGATTTTACCTGGTGACTGA-ATCAGATTTTCAATCCAATGATTGGA-TTCGT 561
| ||| ||||||||| | | | || |||||| | ||| ||| |||||||| ||| |
Sbjct 442 -AGAAACCGATTTTACGAGCT-AGAGATATCAGAGTGGCAAGCCACTGATTGGATTTC-T 498
Query 562 CTTTATTTG-AA-TCTTGCAGTTTGT-G-GACGTCG-TA-A--GATGACTTCAG-AGAAT 612
||||||||| || | ||| | ||| | | ||| | | || | |||| || | ||| |
Sbjct 499 CTTTATTTGAAACTTTTG-A-TTT-TAGCGAC-T-GATAGAGGGATG-TTTGTGCAGACT 552
Query 613 GATTTG-TCCAAGTTGCAGATTCTGAAAGTGGCAATAGAAACTAAGGAAGAAGATTTGCA 671
| | || ||| ||| ||||||||| |||||| || |||||| |||||||| || | |
Sbjct 553 GGTCTGCCCCAGGTT-CAGATTCTGGAAGTGGTGATTGAAACTGAGGAAGAAAATGAGAA 611
Query 672 GCCACC-GAGTAGGAGACTCAAGGCCAAAAGTGCATATGTCTACATAACATTTAAGGGCT 730
||| || || || ||||||||| |||| ||| ||| ||||||| ||||| |||| |||||
Sbjct 612 GCCCCCGGA-TAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTTTACGGGCT 670
Query 731 TGGACAGGGCTCCGA-TTGGTGATGAGATTGGTGAGCATGTTGAACGCAAAGCTATCGTT 789
|| || | | || | | || |||||||||||||||||||||||||||||||||| ||
Sbjct 671 TGCCCAAGTC-CCCACGTCTTGTTGAGATTGGTGAGCATGTTGAACGCAAAGCTATCATT 729
Query 790 AGAAGAGTCATTGATG----AGTATTACTTTACTCTCCTGGGTGGGTTTTCGATTGG 842
||||||||||| |||| || || |||| |||||||| ||| ||||| || |||
Sbjct 730 AGAAGAGTCATCGATGCTTCAGGAT-ACTTGACTCTCCTTGGTAAGTTTTGGAGTGG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5