BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904936
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6... 289 4e-77
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 63.9 3e-09
> AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6794802
FORWARD LENGTH=1267
Length=1267
Score = 289 bits (156), Expect = 4e-77
Identities = 214/242 (88%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 1 ATGACTATGATGTACGATTTCTCGCAGGATTTGCTAGAGGAGATTCTCTCTAGGGTTCCA 60
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 188 ATGACTATGATGTCCGATATCTCGCAGGATTTGTTAGAGGAGATTCTCTCTAGGGTTCCA 247
Query 61 GTAACATCTCTGAGAGCAGTGAGATCAACTTGCAAACGATGGAACGATATAATCAAAGAT 120
||||||||||||||||||||| ||| ||||||||||||||||| ||| || | || |||
Sbjct 248 ATAACATCTCTGAGAGCAGTGAAATCTACTTGCAAACGATGGAAGGATTTATTGAATGAT 307
Query 121 CCGAGCTTTTCAAAGAAGTATGGTGGTAAAGGAGCCAACGAGTTTCTGGTAATCATG-CT 179
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
Sbjct 308 CCGAGCTTTTCAAAGAAGTATGGTGGTAAACGAGACAACGAGTTTCTGGCGATCATGAC- 366
Query 180 GAATGATTTTAGGGCTTGTTTAATGAGCGTCAATCTTCATGG-CATCCTAGACAATAAAG 238
|| || | |||||||| |||||||||||| ||||| ||||| | || | ||||||||||
Sbjct 367 GAGTGGTAGTAGGGCTTCTTTAATGAGCGTAAATCTCCATGGACCTCGT-GACAATAAAG 425
Query 239 AC 240
||
Sbjct 426 AC 427
Score = 283 bits (153), Expect = 2e-75
Identities = 299/365 (82%), Gaps = 28/365 (8%)
Strand=Plus/Plus
Query 243 GTGTATCATTGTGATGGCTTATATATTGTTATGCATCACCAATGAGGACAATACTAGGCT 302
|||| |||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 485 GTGTTTCATTGTGATGG--T-T-TATTGTTATGCATCACCAATGAGGATAATACTAGGCT 540
Query 303 CGTGGTATGGAACCCGTATTTGGAACAAACCAGGTGGATCCAACCCATCAACAAATTTTG 362
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
Sbjct 541 CGTGGTATGGAACCCGTATTTGGCACAAACCAGGTGCATCCAACCCATCGACAAATTCTA 600
Query 363 CAAATTTGATCGTTATTGTATGGGCTACGATAACAATAACAACAACCACAAAATTTT-GA 421
|| || |||| | |||||| |||||||||| ||| |||| |||||||||||||| |
Sbjct 601 CATATATGATTGGTATTGTTTGGGCTACGA---CAAGGACAAAAACCACAAAATTTTAGT 657
Query 422 GGTTC-TTCA--TAAGGTTTGGCTACATTGAGTATGAAATCTACAATTTTATGTCTAATT 478
|||| ||| || | |||||| |||||||||||||||||||| |||| ||||||| |
Sbjct 658 GGTTTATTCCCCTATG-TTTGGCCGCATTGAGTATGAAATCTACAGTTTTTTGTCTAAAT 716
Query 479 CATGGAGT-GTCCCTCA-TA-CAACTACCAATTGGGATATCTCGCCAT-ATTGCA-GTCG 533
|||||| | || | | | | | ||||| ||||| | || |||| | || | | |||
Sbjct 717 CATGGA-TAGTTCTT-AGTTTCC-CTACCGATTGGCAGATATCGCG-TGAT-GAATGTC- 770
Query 534 GGGTGTCTCCTTGAAAGGAAACACTTACTTTATTGCTCAGaaaaaaaTGGAAGTGGAACA 593
|||||| | ||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct 771 ---TGTCTC-T-GAAAGGAAATACTTACTTTATTGCTTATAAAAAAATGGAAGTGGAAGA 825
Query 594 AGTAG 598
|||||
Sbjct 826 AGTAG 830
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 63.9 bits (34), Expect = 3e-09
Identities = 49/56 (88%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 292 AATACTAGGCTCGTGGTATGGAACCCGTATT-TGGAACAAACCAGGTGGATCCAAC 346
|||||||||||||||||||||||||||| | ||| | |||||| |||||| ||||
Sbjct 346 AATACTAGGCTCGTGGTATGGAACCCGTGTACTGGTA-AAACCAAGTGGATTCAAC 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5