BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904952

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50010.1 | Symbols: TUA2 | tubulin alpha-2 chain | chr1:1851...   544    6e-154


> AT1G50010.1 | Symbols: TUA2 | tubulin alpha-2 chain | chr1:18517586-18520000 
FORWARD LENGTH=1775
Length=1775

 Score =  544 bits (294),  Expect = 6e-154
 Identities = 434/502 (86%), Gaps = 7/502 (1%)
 Strand=Plus/Plus

Query  111  TGAAACTGGTGCAGGAAAGCATGTTCCTCGAGCTGTCTTCGTTGATCTTGAGCCCACTGT  170
            ||| || |||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct  313  TGAGACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGT  372

Query  171  GATTGACGAGGTCAGAACTGGTACATACCGTCAGCTTTTCCACCCTGAGCAACTCATCAG  230
            ||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  373  GATCGATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAGCAACTCATCAG  432

Query  231  CGGCAAAGAGGATGCAGCTAACAATTTCGCTCGTGGACATTACACCATTGGGAAGGAGAT  290
            ||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct  433  CGGTAAAGAAGACGCAGCTAACAATTTCGCCCGTGGGCATTACACCATTGGGAAAGAGAT  492

Query  291  TGTTGATCTCTGTCTAG-ACCGCATCAGGAAGCTCACCGACAACTGCACTGGTCTCCAGG  349
            ||||||||| || || | |||| ||||| |||||| | || ||||| ||||||||||| |
Sbjct  493  TGTTGATCTGTG-CTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTCCAAG  551

Query  350  GGTTCCTAGTATTCAACGCTGTTGGTGGAGGTACTGGATATGGTCTTGGATCTCTGCTCC  409
            | ||||| || |||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct  552  GATTCCTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGATCTCTCCTCC  611

Query  410  TTGAGTGTCTCTCTGTGGACTATGGAAAGAAA-TCCAAATTGGGTTTCACTA-TGTACCC  467
            ||||| | || ||||| ||||| || || ||| ||||| ||||||||||| | | |||||
Sbjct  612  TTGAGAGACTTTCTGTTGACTACGGGAA-AAAGTCCAAGTTGGGTTTCAC-AGTTTACCC  669

Query  468  TTCACCTCAGGTTTCAATATATGTTGTTGAGCCATACAACAGTGTTCTTTCCACCCACTC  527
             || || ||||| || |  | |||||||||||| ||||||||||| || ||||| |||||
Sbjct  670  ATCTCCACAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTC  729

Query  528  ACTCTTGGAACCCACTGATATCTCCATCCTTCTCGACAATGAAGCCATCTACGACATCTG  587
            ||||||||||| ||||||| |||| ||||| |||||||||||||| ||||| ||||||||
Sbjct  730  ACTCTTGGAACACACTGATGTCTCTATCCTCCTCGACAATGAAGCTATCTATGACATCTG  789

Query  588  CAGACGTTCC-TCAGCATTGAG  608
            |||||||||| | |||||||||
Sbjct  790  CAGACGTTCCCTAAGCATTGAG  811



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34611327283


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5