BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905006
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28510.1 | Symbols: BGLU24 | beta glucosidase 24 | chr5:1048... 791 0.0
AT1G66270.1 | Symbols: BGLU21 | Glycosyl hydrolase superfamily ... 331 1e-89
> AT5G28510.1 | Symbols: BGLU24 | beta glucosidase 24 | chr5:10481041-10484022
REVERSE LENGTH=1602
Length=1602
Score = 791 bits (428), Expect = 0.0
Identities = 565/631 (90%), Gaps = 10/631 (2%)
Strand=Plus/Plus
Query 803 ACATTGTTGGACATAGATTACCTAAGTTTACCACTGAGCAGAAAGCAAAACTGAGAAACT 862
||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| | |||||
Sbjct 977 ACATTGTTGGACATAGATTGCCTAAATTTACTACTGAGCAGATAGCAAAACTCAAAAACT 1036
Query 863 CAGCTGATTTCGTAGGGATCAACTACTATACTTCCACATTTTCAAACCA-TATGGAGAAG 921
|||| ||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||
Sbjct 1037 CAGCCGATTTCGTAGGGATCAATTACTATACTTCTACATTTTCAAAACACT-TGGAGAAG 1095
Query 922 CCAAATCATGCAGAACTAAGATTTAAACAAGATTCTCTTGTTGAATGGAAAGATAAAAAT 981
||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1096 CCAAACCATGCAGAACCAAAATTTAAACAAGATTCTCTTGTTGAATGGAAAAATAAAAAT 1155
Query 982 ATAAACGAA-GTCAGTATTGGTAGCAAGCCTGCGACCGCT-GAGCTGGCGGTTTATTCTA 1039
||||| || ||| ||||||||||||||||| |||| | | || | ||||||||||
Sbjct 1156 GTAAAC-AATATCACTATTGGTAGCAAGCCTGAAACCGGTCCA-TTGCCAGTTTATTCTA 1213
Query 1040 GAGGCTTTAGAAAAGTTTTGAAGTACGTCAAGGATAAATACGCAAATCCAGAAATTATCA 1099
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1214 CAGGCTTTAGAAAAGTTTTGAAATACGTCAAAGATAAATACGCAAATCCTGAAATTATCA 1273
Query 1100 TCATGGAAAATGGATATGGAGAGAAA-CTTGGAGACAACGATACAGTTGCAGTTGGTACT 1158
|||||||||| ||||||||||| ||| ||| ||| |||||| | |||| | |||||||
Sbjct 1274 TCATGGAAAACGGATATGGAGA-AAACCTTAAAGAGAACGATTCGGTTGAAAATGGTACT 1332
Query 1159 GCTGATTACAACAGAGAAACTTATCTTAAGAGGCATCTTTTGAGTATGTACGAAGCTATT 1218
|||||||||||||| |||| ||||||||||| |||||||| ||||||| || ||||||||
Sbjct 1333 GCTGATTACAACAGGGAAAGTTATCTTAAGAAGCATCTTTGGAGTATGCACAAAGCTATT 1392
Query 1219 TGCGAAGACAAGGTGAATGTTACAGGATATTTTGTATGGTCATTGCTGGATAACTTCGAG 1278
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1393 TGCGAAGACAAGGTAAATGTTACAGGATATTTTGTATGGTCATTGATGGATAACTTTGAG 1452
Query 1279 TGGCAAGAAGGCTTTAAAACCAGATTTGGACTATATTACATTGACTT-CAAAAACAACCT 1337
|||||||| || ||||||| |||||||||||| ||||||||||| || ||||||||||||
Sbjct 1453 TGGCAAGATGGTTTTAAAAACAGATTTGGACTGTATTACATTGA-TTACAAAAACAACCT 1511
Query 1338 CACACGTCATGAGAAAGTTTCAGGCAAGTATTATAGAGAATTTCTTAGTCAAGGTGTTCG 1397
||||||||||||||||||||| |||||||||||||||||||| |||||| | || |||||
Sbjct 1512 CACACGTCATGAGAAAGTTTCGGGCAAGTATTATAGAGAATTCCTTAGTGAGGGAGTTCG 1571
Query 1398 TCCATCCGCGATCAAGAAGGATGAGCTTTGA 1428
||||||||| |||||||||||||||||||||
Sbjct 1572 TCCATCCGCTATCAAGAAGGATGAGCTTTGA 1602
Score = 643 bits (348), Expect = 0.0
Identities = 417/451 (92%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 353 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 412
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 455 GTATAATTCCGTTCGTGACTGTTTTTCATTGGGACACGCCACAAACTCTAGAGAATGAAT 514
Query 413 ATGGCGGCTTCTTAAGCGCAAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTTT 472
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 515 ATGGGGGCTTCTTAAGCGCACACATTGTGAAAGATTTTCGGGAGTATGCTGAGTTTGTTT 574
Query 473 TCCAAGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGTTTTCG 532
|| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 575 TCAAAGAATATGGTGGAAAAGTTAAACATTGGATCACTTTTAACGAGCCATGGGTTTTCG 634
Query 533 CACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTCCTTACGCCAAGG 592
| || |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 635 CGCATGCCGGTTATGACGTTGGAAAGAAAGCACCTGGACGTTGTTCTCCTTACGCCAAGG 694
Query 593 AAAG-AACCGTCAAGGGAGAATGCCTAGGTGGAAGATCAGGTTATGAGGCTTATCTAGTC 651
| | ||| ||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 695 -ACGAAACTGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTTATGAGGCTTATCTAGTC 753
Query 652 AGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATGCGAAAAA 711
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 754 AGTCACAACCTCCTCAACGCTCATGCAGAAGCCGTTGAAGCTTTTCGACAATGTGAAAAA 813
Query 712 TGTAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 771
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGTAAGGGTGGAAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 873
Query 772 AAGGATGCACAAAATGGTGCGACCGTTGACC 802
|| |||| ||||| |||||||||| ||||||
Sbjct 874 AAAGATGAACAAAGTGGTGCGACCATTGACC 904
Score = 484 bits (262), Expect = 7e-136
Identities = 322/352 (91%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 1 ATGTCCATTGGGCTCCTTTTGCTCCTAATCATCGTCGGTTCTCCGGTAAATGCCGATGGA 60
||||| |||||||| |||| ||| ||||||||||| ||| | | ||||||||||||||||
Sbjct 25 ATGTCTATTGGGCTGCTTTGGCTACTAATCATCGTAGGTCCGCTGGTAAATGCCGATGGA 84
Query 61 CCGGTTTGCCCACCGACACCGTCCAACAAACTAAGCCGGGCACATTTTCCTGAAGGTTTC 120
|| ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 85 CCTGTTTGCCCACCGAAACCGTCGGACAAACTAAGCCGGGCACATTTTCCTAAAGGTTTT 144
Query 121 TTATTTGGCACAGCGACTGCGGCATATCAGGTTGAAGGTGCAGTTAATGAAACTTGTCGT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 145 TTATTTGGCACAGCGACTGCGGCATATCAGGTTGAAGGTGCAGTGAATGAAACTTGTCGT 204
Query 181 GGACCGTCCGTGTGGGATATCTATTGTAAGAAATATCCAGAAAAATGCAATGGCGATAAC 240
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 205 GGACCATCCGTATGGGATATCTATTGTAAAAAATATCCAGAAAAATGCAATGGCGATAAT 264
Query 241 GGTACTCAGGCCGTTGAGTTCTTCTATCGTTATAAGGAAGATGTCCAATTAATGAAGAAT 300
|||||||| || ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct 265 GGTACTCAAGCTGTTGATTTCTTCTATCGTTACAAGGAAGATATTCAATTAATGAAGAAT 324
Query 301 CTCAACACAGACGCCTTCAGATTATCTATCTCGTGGACGAGAATTTTTCCTC 352
|| |||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 325 CTAAACACAGATTCCTTCAGATTATCTATCTCATGGACAAGAATTTTTCCTC 376
> AT1G66270.1 | Symbols: BGLU21 | Glycosyl hydrolase superfamily
protein | chr1:24699990-24703041 REVERSE LENGTH=1741
Length=1741
Score = 331 bits (179), Expect = 1e-89
Identities = 354/432 (82%), Gaps = 37/432 (9%)
Strand=Plus/Plus
Query 353 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 412
||||| ||||||||||||||||||| |||||||||||||||||| | | ||| | ||||
Sbjct 492 GTATAGTTCCGTTTGTGACTGTTTTCCATTGGGACACTCCACAAGATTTGGAAGACGAAT 551
Query 413 ATGGCGGCTTCTTAAGCGC-AAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTT 471
||||||| ||||||||| | ||||||||||||||||||||| || ||||| || ||||||
Sbjct 552 ATGGCGGTTTCTTAAGC-CAAAACATTGTGAAAGATTTTCGAGAATATGCAGATTATGTT 610
Query 472 TTCCA-AGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGT-TT 529
|| || || || |||||||||||||| | ||||||||||| |||||||||||||| ||
Sbjct 611 TT-CACTGAATACGGTGGAAAAGTGAAAAACTGGATCACTTTCAACGAGCCATGGGTCTT 669
Query 530 TCGCACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTC-CTTACG-- 586
| || ||||| ||||| ||| | || |||||||| |||||||||||||||| | ||||
Sbjct 670 T-GCTCACGCAGGTTACGACTTAGGAAAGAAAGCACCAGGACGTTGTTCTCGC-TACGTT 727
Query 587 CCAAGGAAAGAACCGTCAAGGGAGAATGCCTAG-GTGGA-AGATCAGGTTATGAGGCTTA 644
|| ||| | || | || | || || | ||| | ||| ||| | ||||||||
Sbjct 728 CC-AGG-TTG---CG---A---AG-A--CCGAGAG-GGACA-ATCTGGTAAAGAGGCTTA 771
Query 645 TCTAGTCAGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATG 704
||||||||||||||| || |||||||||||||||||||| ||||||| ||||| | |
Sbjct 772 TCTAGTCAGTCACAATCTCCTCAACGCTCACGCAGAAGCTGTTGAAG-TTTTC--C---G 825
Query 705 CGAAAAATG-TAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCAC 763
| |||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 826 C-CAAAAGGTTAAAGGTGGGAAAATCGGAATCGCACATAGTCCGGCTTGGTTCGAACCAC 884
Query 764 ATGA-CTTTAAG 774
|||| ||| |||
Sbjct 885 ATGATCTTAAAG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5