BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905007
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 217 5e-56
AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 106 1e-22
> AT5G28500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49
species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0;
Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink). | chr5:10477771-10479384 FORWARD LENGTH=1614
Length=1614
Score = 217 bits (117), Expect = 5e-56
Identities = 133/140 (95%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 134 GTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAGAAAGGAGTGAATGAGAGTTTAG 193
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1208 GTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAGAAAGGAGTGAATGAGAGCTTAG 1267
Query 194 GGATGGTTGTTTTGGTGGTTAGGCCGCCGAGAgatgatgatgatgatgatTGGCAGATAA 253
| |||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1268 GAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGA-G-T-GGCAGATAA 1324
Query 254 ATGATGAAGATTGGGATTAG 273
||||||||||||||||||||
Sbjct 1325 ATGATGAAGATTGGGATTAG 1344
> AT3G04550.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to
110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa
- 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr3:1225922-1227436 FORWARD
LENGTH=1515
Length=1515
Score = 106 bits (57), Expect = 1e-22
Identities = 87/100 (87%), Gaps = 7/100 (7%)
Strand=Plus/Plus
Query 153 AGGATC-GGTGTTGAAGGAGAAAGGA-GTGAATGAGAGTTTAGGGATGGTTGTTTTGGTG 210
|||||| | | ||||||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 1272 AGGATCAGAT-TTGAAGGCGAGA-GAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTG 1329
Query 211 GTTAGGCCGCCGAGAgatgatgatgatgatgatTGGCAGA 250
|| |||||||| | ||| || |||||||||||||||||||
Sbjct 1330 GTGAGGCCGCC-A-AGA-GAAGATGATGATGATTGGCAGA 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5