BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905044
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20395.1 | Symbols: | RING/U-box superfamily protein | chr3... 965 0.0
> AT3G20395.1 | Symbols: | RING/U-box superfamily protein | chr3:7111948-7113870
REVERSE LENGTH=822
Length=822
Score = 965 bits (522), Expect = 0.0
Identities = 610/653 (93%), Gaps = 4/653 (1%)
Strand=Plus/Plus
Query 1 ATGGGCATTGCTAAGATGATTCTTCTGAAACTCACATACGCTGTTTC-TTCTTGGATTAC 59
||||||||| |||||||||||||||||||| ||||||| | |||||| ||| ||||||||
Sbjct 79 ATGGGCATTTCTAAGATGATTCTTCTGAAATTCACATATGTTGTTTCTTTC-TGGATTAC 137
Query 60 TGGCGCGGTCGTCATAATGTCAAGAACGATAAAGCGAGCTCTGTTGGGTTCATTCATCCT 119
| ||| | || ||| |||||||||||||||||| |||||| ||||||| ||||||||| |
Sbjct 138 TTGCGTGATCTTCAAAATGTCAAGAACGATAAAACGAGCTTTGTTGGGCTCATTCATCTT 197
Query 120 CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CATTCTTGCTTCCGCTAGTGTTGTGGTAGCCGCCATTGTAGGAGCCATCGAAGGTCACAC 257
Query 180 CACTGACATCGGATTTCTTCAAGGTAGTTTGCTCGGAGTCGTGGCTGGAGTTATCACCGC 239
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 258 CACTGACATCGGATTTCTTCAAGGTAGTGTGCTTGGAGTGGTGGCTGGAGTTATCACTGC 317
Query 240 GGTCCAACTCTTTGGGCCGGTGCTACATGGTGATCAACCTTTGTCTAAGGTGGCTATACT 299
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 318 GGTCCAACTCTTTGGACCGGTGCTACATAGTGATCAACCTTTGTCTAAGGTGGCTTTACT 377
Query 300 CAGGAGAGTAGTGAATGGGAAAGCCATCATGGGATTGGTTAGACCGTTTGCTCTCAAAGC 359
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 378 CAGGAGAGTAGTGAATGGGAAAGCCATTATGGGATTGGTTAGACCTTTTGTTCTCAAAGC 437
Query 360 ATATCAATGGCAAATAATAACATTGGATACAAATTACATGGAGAGTTCAAACATATACGA 419
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 438 ATATCAATGGCAAATAATAGCATTGGATACAAGTTACATGGAGAGTTCAAACTTATACGA 497
Query 420 TTTCAAGCAAGAGAAAAAGGGATTATCGAAGAGCTCTATTGAAAACATCCCGATGTTCTA 479
|||||| || || ||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 498 TTTCAATCATGAAAAAAAGGGACTATCGAAGAGCTCTATTCAGAACATCCCGATGTTCTA 557
Query 480 CAACCGTTCAGATCAGCAAACAAAATCAAGTTGTTCGATTTGCTTACAGGATTGGGAAGA 539
|||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 558 CAACCGTTCAGAACATCAAACAAAATCGAGTTGCTCGATTTGCTTACAGGATTGGGAAGA 617
Query 540 AGGGGAAGTAGGAAGAAAGCTAG-AGAGATGTGGCCACATATTTCATATGAATTGCATAG 598
||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 618 AGGGGAAGTAGGAAGAAAGCTAGCA-AGATGTGGCCACACATTTCATATGAATTGCATAG 676
Query 599 ATGAGTGGTTGTTTAGGCAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA 651
||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 677 ATGAGTGGTTGCTTAGACAAGAAACTTGCCCCATTTGTAGAGACCATCTTTCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5