BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905059
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20490.1 | Symbols: | unknown protein; Has 754 Blast hits t... 1701 0.0
> AT3G20490.1 | Symbols: | unknown protein; Has 754 Blast hits
to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa
- 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes
- 619 (source: NCBI BLink). | chr3:7153539-7156536 REVERSE
LENGTH=1833
Length=1833
Score = 1701 bits (921), Expect = 0.0
Identities = 1013/1058 (96%), Gaps = 4/1058 (0%)
Strand=Plus/Plus
Query 394 GCACCTGCCTCAGCGAGAAGTCATTTTTCTAGTTGCAGCTCAAGGGTGCCACTTCATGGT 453
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCACCGGCCTCAACAAGAAGTCATTTTTCTAGTTGCAGCTCAAGGGTGCCACTTCATGGT 535
Query 454 TCTGGGGTTTTATCTAATCAACCTTCTATCTCTCGGGGAAAAAGAAAGCAGTCGGATGTT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCTGGGGTTTTATCTAATCAACCTTCTATCTCTCGGGGAAAAAGAAAGCAGTCGGATGTT 595
Query 514 CAAGCATCTGCTGCCTCTGGGATTAGTTCTGTTGCATCATTGTTTCAGAGGTCAAGTCGT 573
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 596 CAAGCATCTGCTGCCTCTGGGATTAGTTCTGTTGCATCGTTGTTTCAGATGTCAAGTCGT 655
Query 574 AGTCCTCTGCGAAGGTTCCAGCTACTAGATTCAGATTCTGAAGATGACCTTCCATCCACC 633
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 AGTCCTCTACGAAGGTTCCAGCTACTAGATTCAGATTCTGAAGATGACCATCCATCCACC 715
Query 634 AGCAGAGATTTAAGCAGAGTAACTAAAAAACATGATTCATCCTCAAAGGATCAACCATCT 693
||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 716 AGCAGAGATTTAAGCGGAGCAACTAAAAAACATGATTCATTCTCAAAGAATCAACCATCT 775
Query 694 ATTGCAATTAAACCAAAGAGAAAGGAACCTGGATCTATTCCAAGTATTAAAGATCTGTGG 753
||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 776 ATTGCAAGTAAACCGAAGAGAAAGGAACCTGGATCTATCCCCTGTATTAAAGATCTGTGG 835
Query 754 AAAGATTTTTCCCCGGCAATTTCCAAGATTCAAACACCAGCTTTGGATGATGTTTGTCAG 813
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 836 AAAGATTTTTCCCCGGCAAGTTCCAAGATTCAGACACCAGCTTTCGATGATGTTTGTCAG 895
Query 814 GACTATTTTAGCTCCATCAAGACGACTAGCACAGCTCAGAAACAAAGCAGTGCTGCGGCA 873
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 896 GACTATTTTATCTCCATCAAGACGACTAGCACAGCTCAGAAACAAAGCAGTGCTGTGGCA 955
Query 874 AGTAGTAGCAATAGCGGAAATCATAACTTGACTGGCTTTCAGCAAACTGGGCAATTCTTG 933
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 956 AGTAGTAGCAATAGCGGAAATCATAACTTGACTGGCTTTCAGCAAACTGAGCTATTCCAC 1015
Query 934 GATTGTTCTCACCCTTCTCCTCCATCTCATCGTTTCTTCTTGCATAGTGATCCAAGGATC 993
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GATTTTTCCCACCCTTCTCCTCCATCTCATCGTTTCTTCTTGCATAGTGATCCAAGGATC 1075
Query 994 CGGAATCTAGCTCAACAGCGGTTACCAAACTTCTTGCCTCTGGGAATTGTCAATGATAGG 1053
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1076 CGGAATCTAGCTCGACAGCGGTTACCAAACTTCTTTCCTCTGGGAATTGTCAATGATAGG 1135
Query 1054 GAGAGCCAGCGAGAGGTGTTCCTTGTTGATTATATGAATCAATTTGGCAGCAAAGGGAGT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAGAGCCAGCGAGAGGTGTTCCTTGTTGATTATATGAATCAATTTGGCAGCAAAGGGAGT 1195
Query 1114 TCTAAAACTGGAGACTCTAGCAGCAAAAGCTGCAGAAGAGGGCAAACAAAGTCAAAGTTT 1173
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1196 TCTAAAGCTGGAGACTCTAGCAGCAAAAGCTGCAGAAGAGGGAAAACAAAGTCAAAGGTT 1255
Query 1174 TCAAA-AGGACAAGAGAGCGCACACAATTCTGAAGGCTGGTTAAATCCTAAAACGAGAGC 1232
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCAAAGAGC-CAAGAGAGCGCACACAATTCTGAAGGCTGGTTAAATCCTAAAACGAGAGC 1314
Query 1233 TGCAGCTCCAAAGGATGCTGGCAAAAGGCGTGTATCAGCTAACAGTGGCTCTGCAGGTCA 1292
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 1315 TGCAGCTCCAAAGGATGCTGGGAAAAGGCGTGTATCTGCTGACAGTGGCTCTGCAGGTCA 1374
Query 1293 TTGGTTCACATCCCCAGAAGGAAGGAAGGTATATATCTCTAAAAGCGGACAGGAGTTTTC 1352
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1375 TTGGTTCACATCCCCAGAAGGAAGAAAGGTATATATCTCTAAAAGCGGACAGGAGTTTTC 1434
Query 1353 AGGTCAAAGTGCTTATAGATGTTACAAAAAGGAGAACGGAGGT-GGGTTTAAGAAGTCTA 1411
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1435 AGGTCAAAGTGCTTATAGATGTTACAAAAAGGAGAACGGAG-TCGGGTTTAAGAAGTCCA 1493
Query 1412 GAAAGAAACGACAGCCAAAGAAGAAGGCGAAGAATTGA 1449
||||||||||||| |||||||| |||||||||||||||
Sbjct 1494 GAAAGAAACGACAACCAAAGAAAAAGGCGAAGAATTGA 1531
Score = 418 bits (226), Expect = 8e-116
Identities = 292/321 (91%), Gaps = 16/321 (5%)
Strand=Plus/Plus
Query 1 ATGGATTCAATTGAGCCACCATCGTTTTCGCTAGGGTTTGATCTTGATGCTGCATCGGA- 59
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATGGATTCGATTGAGCCACCATCGTTTTCGCTAGGGTTTGATCTTGATGCTGCATCGGAT 214
Query 60 -T-C---C----A--CATCAGAACCCTAGCTCCACCGGCGACCAATTAATCGGGGACGGC 108
| | | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 215 CTCCAATCGGAAATCCATCAAAACCCTAGCTCCACCGGCGACCAATTAATCGGGGACGGC 274
Query 109 GATAACGAGCCAGAGGCGGGACTTACGGTCTCAGATTCCGATCGGGAGCTTGAACCAGAT 168
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 275 GATAACGAGCCAGAGTTGGGACTTACTGTCTCAGATTCCGATCGGGAGCTTGAACCAGAT 334
Query 169 TTTAGAAGTCCGGTTCTCAAGCGGTTGCGACG-GGGAATTAATCCCAACAAGTGTTCT-T 226
|||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 335 TTTACAAGCCCGGTTCTCAAGCGGTTGCGACGAGGGA-TTAATCCCAACAAGTGTTCTGT 393
Query 227 GGAAAGATGATAGAGGCGTGGCTATAGAGGATCGGGATGATGACATCGAAGAGTTCTCTT 286
| |||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 394 G-AAAGATGATAGAAGCGTAGCTGTAGAGGATCGGGATGATGACATTGAAGAGTTCTCTT 452
Query 287 CTCCAGAGGATTTTCCCACGG 307
|||| ||||||||||| ||||
Sbjct 453 CTCCTGAGGATTTTCCTACGG 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5