BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905063

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr...   145    4e-34


> AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich 
protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858
Length=858

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 149/181 (82%), Gaps = 14/181 (8%)
 Strand=Plus/Plus

Query  9    GGGTTTGGTTTCATCACACC-AGACGACGGTGGTGAGTGGTGACGATCTCTTCGTTCACC  67
            |||||||||||||||||||| || ||||      | ||||||||||||||||||||||||
Sbjct  141  GGGTTTGGTTTCATCACACCTAG-CGAC------G-GTGGTGACGATCTCTTCGTTCACC  192

Query  68   AGTC--C-ATTAGATCTGA-GAAATTTCGTAGCCTTGCCGTTGATGAATCTGTTGAGTTC  123
            ||||  | || |||||||| | | ||||||||||| || | ||| |||||||||||||||
Sbjct  193  AGTCTTCCATCAGATCTGAAGGA-TTTCGTAGCCTCGCAGCTGAGGAATCTGTTGAGTTC  251

Query  124  AAGGTTGAGGTTGACAACGCCATTCGTGTGAAGGCTGTTGAAGTTTCTGGACCCGAGGGT  183
             | ||||||||||||||| ||   |||   |||||| ||||||| ||||||||||| |||
Sbjct  252  GACGTTGAGGTTGACAACTCCGGCCGTCCCAAGGCTATTGAAGTGTCTGGACCCGACGGT  311

Query  184  G  184
            |
Sbjct  312  G  312


 Score =  141 bits (76),  Expect = 5e-33
 Identities = 102/115 (89%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  226  GAGGAGGTGGTGGTGATGGTACTTGCTTTAGGTGTAGTGAATCAAGTCACATGGCGAGAG  285
            |||||||||||||||||  | ||||||||| |||  ||||| || |||||||||||||||
Sbjct  451  GAGGAGGTGGTGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCGAGAG  510

Query  286  AATGCTCTCAAGGTGGTGGAGGATACAGTGGTGGTGGAGGTGGTTGAAGGTACGG  340
            |||||||||||||||||||||||||||| || || || |||||| ||||||||||
Sbjct  511  AATGCTCTCAAGGTGGTGGAGGATACAGCGGAGGCGGGGGTGGTGGAAGGTACGG  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5