BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905064

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06170.1 | Symbols:  | Serinc-domain containing serine and s...   285    2e-76
  AT3G13235.1 | Symbols:  | ubiquitin family protein | chr3:42712...   163    9e-40


> AT3G06170.1 | Symbols:  | Serinc-domain containing serine and 
sphingolipid biosynthesis protein | chr3:1867415-1869948 FORWARD 
LENGTH=1545
Length=1545

 Score =  285 bits (154),  Expect = 2e-76
 Identities = 188/204 (92%), Gaps = 3/204 (1%)
 Strand=Plus/Plus

Query  149   CAGGTGTAAAGGAGGCATTGTTAGAAGACCCCGAGGACGAGAAGAAGACGAGTGGTGAAG  208
             ||||||| ||||| ||||||||||  ||||| ||||||| |  ||||| |||||||||||
Sbjct  1043  CAGGTGTGAAGGATGCATTGTTAGGGGACCCTGAGGACG-G--GAAGAAGAGTGGTGAAG  1099

Query  209   CCGAGGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTGTGCGCTTGCGA  268
             |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1100  CCGAGGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGA  1159

Query  269   GCATGTATGGTGCAATGCTTCTCTCGGGATGGACTGACTCATCAAAGAATGCGACTCTGA  328
             ||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  1160  GCATGTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGA  1219

Query  329   TTGATGTGGGATGGACCTCGGTCT  352
             | ||||||||||||||||||||||
Sbjct  1220  TCGATGTGGGATGGACCTCGGTCT  1243


> AT3G13235.1 | Symbols:  | ubiquitin family protein | chr3:4271258-4274455 
REVERSE LENGTH=1586
Length=1586

 Score =  163 bits (88),  Expect = 9e-40
 Identities = 106/114 (93%), Gaps = 3/114 (3%)
 Strand=Plus/Plus

Query  1     ATGACTGTT---GGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGATATCCCTTCC  57
             |||||||||   |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  1026  ATGACTGTTGGAGGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGACATCCCGTCC  1085

Query  58    CGATTTCTGGATGAAGAACGTGTACCGAATGATGCATCTAGCTCTGGAGCAACG  111
             ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct  1086  CGATTTCTGGATGAAGAGCGTGTTCCAAATGATGCATCTAGCTCTGGAGCAACG  1139



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5