BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905088
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20700.1 | Symbols: | F-box associated ubiquitination effec... 440 1e-122
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 270 2e-71
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 102 6e-21
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 73.1 5e-12
AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 63.9 3e-09
> AT3G20700.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:7233525-7234505 REVERSE LENGTH=981
Length=981
Score = 440 bits (238), Expect = 1e-122
Identities = 589/751 (78%), Gaps = 53/751 (7%)
Strand=Plus/Plus
Query 301 CTTGTGGTTTTATTTAACCCGTATTGGGG-GAAA-CATAAATGGTTCAAACGCACAA-AT 357
||||||| || | ||||||||| ||||| ||| || |||||| |||| | || || ||
Sbjct 265 CTTGTGG--TT-TGTAACCCGTA-TGGGGTAAAACCA-AAATGGATCAATCCCA-AAGAT 318
Query 358 AATTATGGGAGATTCGACAAATTTGCTTTCGGATACGACAAATCCTGCGGTAGCCACAAA 417
||||| |||||||| |||| |||| || |||||| ||||||| ||||||||| |||||
Sbjct 319 AATTACGGGAGATTAGACATATTTTCTCTCGGATTTGACAAATTATGCGGTAGCTACAAA 378
Query 418 ATATTGAGGCTTTTCGGTGATTACCTA-AAT-AACATAGAAATCTACAATTTGAGCTCTG 475
|| |||||| ||| | |||| | | ||| ||| | |||||||| |||||||||||
Sbjct 379 ATCTTGAGGATTTAC---GATT-TCGATAATAAAC-TCCAAATCTACGATTTGAGCTCT- 432
Query 476 ATTCTGATTCATGGATGGTTCCTAGTGTCACTCTTGAATGGGATATAGTGGATATGCATG 535
| ||||||||||| |||| || | |||||||| | ||||||||| | |||||||
Sbjct 433 A-----ATTCATGGATGATTCCAAGAGACACTCTTGGACGGGATATAGAGTATATGCAAA 487
Query 536 ATGACGTGTCTTTGAAGGGCAATACATACTGGTATGCTAAAGATAAAGAATCAGAAGATT 595
||| |||||||| |||| ||||| || |||| ||||| ||||||| ||||| || |||
Sbjct 488 ATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAGAGATAAACAATCACAATATT 547
Query 596 ATTATTTATTATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTTTGCCTCTTCCTC 655
|| ||| || ||||||||||||||||| |||||||||||||||| | ||| || |
Sbjct 548 GTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCGGACCGC----G--TCTACCAC 601
Query 656 AGCCCTTCATCAATGAAGGTTGTGGGTCTCTATCTGTGGTTGGAGAAGAGAAGCTTGCAG 715
|||| | |||||| || || || ||||||||||| |||| ||||||| |||||||||
Sbjct 602 TGCCC-T--TCAATGGAGCTTATGTGTCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAG 658
Query 716 TGTTATTACAG-CATTGGGGTGCATCAGAAATGGAGATTTGGGTTACGAACAAGATTGAG 774
||||||| ||| || | || | ||| || || |||||||||||||||||||||||||||
Sbjct 659 TGTTATTTCAGCCA-TCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAG 717
Query 775 CCTGATGAAGTGTCGTGGAGCAAGTTCTTGAAAGTTTATAA-GAGGCCACATTGTTTT-T 832
||||| ||||||||||||||| |||||||||||| | || || | || | ||| | |
Sbjct 718 CCTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGA-AATGAAACTACGT-GTTCTGT 775
Query 833 ACGTTGCGAATTTCTTGATTGAGGAAG-AGAAGAAAGTCGCAGTGGTTTTTGATGATTAT 891
| ||| ||||||||||||||| ||| | |||||| ||||||| ||||||||| | |
Sbjct 776 -C-TTG-GAATTTCTTGATTGAC-AAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGAC 831
Query 892 GAGACAAAGAGTTTTAAATCCAAT-ATTGTCAGCAACGCTTACATCATTAGAGAGAATGG 950
|| ||||| | |||||| ||||| | | || | |||||| ||||| |||| |||||
Sbjct 832 AAGGCAAAGGGGTTTAAAACCAATTAC-GACAT-A--GCTTACGTCATTGGAGAAAATGG 887
Query 951 TTATTTCAGAACAGTGGATCTCAGTGAATATCCATACACAAC-ACGTTGCGGTCTTGCT- 1008
||||| ||||| |||||||||| |||||| |||| ||| ||| || |||| || ||| |
Sbjct 888 TTATTACAGAAGAGTGGATCTCCGTGAATCTCCAAACA-AACCACTTTGCCGTATTG-TG 945
Query 1009 TGCTC-TTATGTACCAAGTTCTGTGCAAATC 1038
| || |||||| ||||||| ||||||||||
Sbjct 946 T-CTTGTTATGTTCCAAGTTGTGTGCAAATC 975
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 270 bits (146), Expect = 2e-71
Identities = 467/612 (76%), Gaps = 62/612 (10%)
Strand=Plus/Plus
Query 301 CTTGTGGTTTTATTTAACCCGTATTGGGG-GAAACATAAATGGTTCAAACGCACAA-A-- 356
||||||| || || |||||||||||||| ||||| ||| || || | || ||| |
Sbjct 361 CTTGTGG--TT-TTGAACCCGTATTGGGGACAAACA-AAACGGATC--ATGC-CAAGACC 413
Query 357 TAATTAT-GGGAGATTCGACAAATTTGCTTTCGGATACGACAAATCCTGCGGTAGCCACA 415
| || | ||| | ||||||| | |||| ||||||||||||||||| ||||||||||||
Sbjct 414 TCCTT-TCGGGTGCTTCGACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACA 472
Query 416 AAATATTGAGGCTTTTCGGTGAT-TACCTAAATAACATAGAA-ATCTACAATTTGAGCTC 473
|||| ||||||||||||||| | ||| ||||||| | || |||||| ||||||||||
Sbjct 473 AAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCT-CAATATCTACGATTTGAGCTC 530
Query 474 TGATTCTGATTCATGGATGGTTCCTAG-TGTCACTCTTGAATGGGATATAGTGGATATGC 532
| | | |||||||||| ||||| | || |||||||||| | ||||| | | |||||
Sbjct 531 T-A----G-TTCATGGATGATTCCT-GATGGCACTCTTGAACGAGATATGGAGTATATGA 583
Query 533 ATGATGACGTGTCTTTGAAGGGCA-ATACATACTGGTATGCTAAAGATAAAGAATCAGA- 590
| | | |||||||||||| || | |||| |||||||||||||||||||| |||||| |
Sbjct 584 AACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGCTAAAGATAAGGAATCA-AT 641
Query 591 AGATTATTATTTATTATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTTTGCCTCT 650
||| | || |||||||||||||||||||||||||||||||| ||| | | | |||||||
Sbjct 642 AGACTGGTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701
Query 651 TCC-TC-AGCCCT-----TCAT-C---A-ATGAAGGTTGTGGGTCTCTATCTG-TGGTTG 697
|| | || | | || | | | |||||| | ||||||||||| | ||
Sbjct 702 GCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTGCTC-TTA 760
Query 698 GAGAAGAGAAGCTTGCAGTGTTATTACAGCATTGGGGTGCATCAGAAATGGAGATTTGGG 757
||||||||||||||| |||||| || | ||| | | || | ||| |||||||
Sbjct 761 AAGAAGAGAAGCTTGCGGTGTTACTA-----T-GGGAT--A-CA-A--TGGTTATTTGGG 808
Query 758 TTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCAAGTTCTTGAAAGTTTATAAG- 816
|||||||||||||||||||||||| ||||||||||||| ||||| ||| || ||| |
Sbjct 809 TTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATGG 868
Query 817 AGGCCACATTGTTT-TTA-CG-T-TGCGAATTTCTTGATTGAGGAAGAGAAGAAAGTCGC 872
| ||| | | ||| || || | || ||||||||| ||||| || || |||||||||||
Sbjct 869 AA-CCA-AGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGC 926
Query 873 AGTGGTTTTTGA 884
||| || |||||
Sbjct 927 AGTTGTGTTTGA 938
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 102 bits (55), Expect = 6e-21
Identities = 89/105 (85%), Gaps = 4/105 (4%)
Strand=Plus/Plus
Query 25 GATTTGGTAGAG-GAGATTCTCTCTAGGGTTCCGTTGACATCTAC-GAGAGCAGTGCGAT 82
|||||||||| | || ||||| ||||||||||| || |||||| | | |||||||||
Sbjct 77 GATTTGGTAG-GTGATATTCTTTCTAGGGTTCCATTTACATCT-CTAATCTCAGTGCGAT 134
Query 83 CTACTTGTAAAAAGTGGAACGCTTTATCCAAAGATCAGAGCTTTG 127
||||||||||||||||||| |||||||| ||| |||||| |||||
Sbjct 135 CTACTTGTAAAAAGTGGAATGCTTTATCGAAAAATCAGATCTTTG 179
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 73.1 bits (39), Expect = 5e-12
Identities = 152/201 (76%), Gaps = 30/201 (15%)
Strand=Plus/Plus
Query 607 TGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTT-TGCCTCTTCCTCAGCCCTTCAT 665
||||||||||||||||||||||||||||| |||| || | || || | | | || | ||
Sbjct 697 TGTTTTGATTTTACAAGAGAGAGATTCGGGCCGC-TTCT-CC-CT-C-T-A-CCGTGCAG 749
Query 666 CAATGAAGGTTGTGGGTCTCTATCT-GTGGTTGGAGAAGAGAAGCTTGCAG-TGTTATTA 723
| || || | ||| | | ||||| ||| || ||||||||||||||||| | |||||
Sbjct 750 CGCTGTAGAT-GTGACT-T-TATCTTGTG-TTAAAGAAGAGAAGCTTGCAGCT-TTATTT 804
Query 724 CAGCATTGGGGTGCATCAGAAATGGAGATTTGGGTTACGAAC-AAGATTGA-GCCTGATG 781
|||| || | | | || ||||||| ||| |||||| | |||||||| ||| ||
Sbjct 805 CAGCGTTA---T-C-TGAGT--TGGAGATATGGATTACGA-CTAAGATTGATGCC-GA-- 853
Query 782 AA-G-TGTCGTGGAGCAAGTT 800
|| | ||||||||||||||||
Sbjct 854 AACGGTGTCGTGGAGCAAGTT 874
> AT5G41494.1 | Symbols: | pseudogene of F-box family protein
| chr5:16602589-16603438 FORWARD LENGTH=850
Length=850
Score = 63.9 bits (34), Expect = 3e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 605 TATGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGTT-TGCCTCT 650
|||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 308 TATGTTTTGATTTTACAAGAGAGAGATTTAGACCGC-TTCTGCCTCT 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5