BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905090
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 1413 0.0
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 414 7e-115
AT1G67450.1 | Symbols: | F-box and associated interaction doma... 104 2e-21
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 67.6 2e-10
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 1413 bits (765), Expect = 0.0
Identities = 998/1108 (90%), Gaps = 26/1108 (2%)
Strand=Plus/Plus
Query 4 ATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAG-AACAGTG-CG 60
|||||||| ||||||||| | |||||||||||||||||||||| | | | || ||| ||
Sbjct 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTGTGACG 60
Query 61 ATCTATTTGCAA-A-AGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATCCGA 118
| ||| | || | |||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 61 -TTTATGAG-AACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGATAGGA 118
Query 119 TCTTTACAAATAATTACATCCGCAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTGATGA 178
|||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 119 GCTTTACAAATAAGTACATCCGCAATATAGCCGCATTAGGGGAAAGAGAGTTTCTGATGA 178
Query 179 TCAAGGAATTTAGTGTTTATTTGGTCGGCGTCAATCTCCATGGTATTCAAAACAACAA-T 237
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 179 TCAAGGAATTTAGTATTTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAACAACAACT 238
Query 238 GTTGGTCTATCTATA-AAGCGTAAAGGTAGACTTATTAGCATGGACAATACAGTTCGGAG 296
||| ||| |||||| || | |||||||| |||||||||||||||||||||| |||||||
Sbjct 239 -TTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACAATTCGGAG 296
Query 297 ATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTCGGGGAAAA- 355
|||||||||||| ||| |||||||||||||||| ||||| |||| ||||| ||||
Sbjct 297 ATTCTGTATATCTCAAATCTTTCACTGCAATGGCTTATTTTTATGTGTTTC-ACAAAAAG 355
Query 356 ACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTTGC-AAACCAAAATGGATC 414
|||||| |||||||||||| ||||||||| ||||| |||| | ||||||| |||||||
Sbjct 356 ACATGG---ATAATAGGCTTGTGGTTTGGAACCCGTATTGTT-CGAAACCAAGATGGATC 411
Query 415 AAACCCACCAGATATACTTATTATGGGACAGCAGAGAGGTTTGCTCTCGGATATGACAAA 474
||| | |||| | || | ||||| |||||| || ||||||||||||||||||||||||
Sbjct 412 AAA--C-CCAG-T-TA-TAATTATAGGACAGTTGACAGGTTTGCTCTCGGATATGACAAA 465
Query 475 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACATCGAAATC 534
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 466 TCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAATC 525
Query 535 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTG 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGATATAGTA 585
Query 595 TATATGCAACAAGGTGTGTCTTTGAAGGAAAAGACTTATTGGTATGCTAGAGATAAGGAA 654
|||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 586 TATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAAAGAA 645
Query 655 TCAGAAGATAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 714
|||||| || |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 TCAGAAAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTG 705
Query 715 CCTTTGCCCTTCATGTATTTCGATGATGTATCTCTATCTGTTGTTAAAGAAGAGCAGCTT 774
||||||||||||||| |||| |||||||| ||||||||||| || ||||||||| |||||
Sbjct 706 CCTTTGCCCTTCATGAATTTGGATGATGTGTCTCTATCTGTGGTCAAAGAAGAGAAGCTT 765
Query 775 GCGGTGTTAGTAAAGAGGTGGGATACATGTGAGATGGAGATTTGGGTGACGGACAAGATT 834
||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 766 GCGATGTTATTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACAAGATT 825
Query 835 GAGCCCGATGTGTCGTGGAGCAGGTTCTTAAAAGTTGATATTAAACCACGTTTTGATTTT 894
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 826 GAGCCCGATGTGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTAAACCACGTTTTGATTTT 885
Query 895 GCAAATTTCGCCGTGATTGATGTGGAGAAGAAAGTCGCATTGGTTTTTGATAAAAATGAG 954
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 886 GCAAATTTCGTCGTGATTGATGTGGTGAAGAAAGTCGCATTGGTTTTTGATAAAAACAAG 945
Query 955 GCAGAGAAGTTGCAATCCAGTTACAGCATAGCTTACATCATCGGAGAGAAAGGTTGTT-T 1013
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 946 GCAGAGAAGTTTCAATACAGTTACAACATAGCTTACATCATCGGAGAGAAAGGTTATTGT 1005
Query 1014 CAAAGAAGTGGATCTCGGTGAATCTCCATACACACCACTTTCCTGTCTGGCATGCTCTTA 1073
| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||
Sbjct 1006 -AGAGAAGTGGATCTCGGTGAATCTCCATACACGCCACTTTCCTATCTTGCGTGCTCTTA 1064
Query 1074 TGTTCCAAGTTACGTGCAGCTCAAGTAA 1101
|||||||||||||||||| ||| |||||
Sbjct 1065 TGTTCCAAGTTACGTGCAACTCGAGTAA 1092
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 414 bits (224), Expect = 7e-115
Identities = 839/1114 (75%), Gaps = 129/1114 (12%)
Strand=Plus/Plus
Query 1 ATGATGATGTCCAATCTTCCACAGGATTTGGTTGAGGAGATTCTCTAT-GAGAACAG-TG 58
||||||||||| ||||||||| |||||||||| ||||||||||||| | | | | | |
Sbjct 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
Query 59 CGAT--CT-ATTTGCAAAAGCGATCTATTTGCAAAAACTGGAACGCTTTATCCAAAGATC 115
|| || | |||| | ||||||| ||||||||| ||| ||| |||||| ||| |||
Sbjct 61 AAATACCTGA-GAGCAATA-CGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118
Query 116 CGATCTTTACAAATAATTACATCCG-CAATGTAGCCGCATCAGGGGAAAGAGAGTTTCTG 174
|| |||| | ||||| |||| || ||| | ||| | ||||||||||| ||||||||||
Sbjct 119 GGAGCTTTGCGAATAAGAACAT-CGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTG 177
Query 175 ATGATCA-AGGAATTTAGTGTTTATTT-GGTCGGCGTCAATCTCCATGGTATTCAAAACA 232
||||||| | |||||| ||||| ||| ||||||||||||||||||| | | ||| ||||
Sbjct 178 ATGATCACA-CAATTTAATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACA 235
Query 233 ACA-ATGTTGGTCTATCTATAAAGCGTAAAGG-TAGACTTATTAGCATG-GACAATACAG 289
||| | ||| ||||||||| ||| | |||| || | || |||||| | ||||| | ||
Sbjct 236 ACAGCT-TTGATCTATCTATTCAGC-TTAAGGCTAAAATTGTTAGCA-GAGACAAAAAAG 292
Query 290 TTCGGA--GATTCTGTATATCCCAAGTCTTTCACTGCAATGGTTTATTGCTATGCGTTTC 347
| || |||| | ||| |||||| |||||||||| ||| |||| |||||| | |
Sbjct 293 AT--GATTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCG-TAC 349
Query 348 GGGGAAAAACATGGATAATAATAGGCTTGCGGTTTGGAATCCGTACTGTTG-CAAACCAA 406
||| | | || ||| ||||| ||||| ||| ||||| || | |||| |||
Sbjct 350 -GGG------A---A-AA-AAT--GCTTGTGGTTTTGAACCCGTATTGGGGACAAA-CAA 394
Query 407 AATGGATCAAACCCACCAGATATACTTATTATGGG-ACAGCAGAGAGGTTTGCTCTCGGA 465
|| ||||| | ||| ||| | | | || ||| | | || |||| ||||||||||
Sbjct 395 AACGGATC-ATGCCA--AGACCT-CCT-TT-CGGGTGCTTC-GACAGGTATGCTCTCGGA 447
Query 466 TATGACAAAT-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGAT-AACCTAAATA 523
|| ||||||| || | ||||||||||||||| |||||||||| |||| | |||| |||||
Sbjct 448 TACGACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATA 505
Query 524 ACATCGAA-ATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAA 582
|| || || ||||||||||||||||| | |||||||| | ||||| ||| ||||||||||
Sbjct 506 ACCTC-AATATCTACGATTTGAGCTCTAGTTCATGGATGATTCCTGATGGCACTCTTGAA 564
Query 583 CGGGATATAGTGTATATGCAACAAGGTGTGTCTTTGAA-GGAAAAGACTTATTGGTATGC 641
|| ||||| | ||||||| ||||||| ||||||||||| || | | ||||| ||||||||
Sbjct 565 CGAGATATGGAGTATATGAAACAAGGCGTGTCTTTGAATGG-AGATACTTACTGGTATGC 623
Query 642 TAGAGATAAGGAATCAGA-AGA-TAAATACTTATTTTCTTTTGATTTTACAAGAGAGAGA 699
|| ||||||||||||| | ||| | |||||||| | ||||||||||||||||||||||
Sbjct 624 TAAAGATAAGGAATCA-ATAGACT-GGTACTTATTATGTTTTGATTTTACAAGAGAGAGA 681
Query 700 TTTGGACCGCGTCTGCCTTTGCCCTTCA-T---G----T-AT--T-T-CG-AT-GATG-T 743
|||||| | | ||||||| ||||||| | | | | || | | | | | | |
Sbjct 682 TTTGGAACACCTCTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT 741
Query 744 A--TCTCTATCTGTTGTTAAAGAAGAGCAGCTTGCGGTGTTAGTAAAGAGGTGGGATACA 801
| |||||||||| | ||||||||||| |||||||||||||| || |||||||||
Sbjct 742 AAGTCTCTATCTGCTCTTAAAGAAGAGAAGCTTGCGGTGTTACTA------TGGGATACA 795
Query 802 TGTGAGATGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAGG 858
|| | | | ||||||| ||| ||||||||||||| |||| ||||||||||||
Sbjct 796 A-TG-GTT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATC 849
Query 859 TTCTTAAAAGTTGATATTAAACCACGT-TTTGATTTT-GC-A----AATTTCGCCGTGAT 911
||||||||| ||||||| ||||| || ||| ||| | || | |||||| | ||
Sbjct 850 TTCTTAAAACTTGATATGGAACCAAGTATTT-ATTGTCGCTATGGGAATTTCTTC---AT 905
Query 912 TGATGTGGAGAAGAAAGTCGCA-TTGGTTTTTGATAAA-A-A--T-G--A-GG-CA-GAG 960
||| | ||| |||||||||||| ||| | ||||| ||| | | | | | || || | |
Sbjct 906 TGACGAGGAAAAGAAAGTCGCAGTTG-TGTTTGAGAAAGACAGCTCGTCATGGTCATG-G 963
Query 961 AAGT-TGCAATCC-AGTTACAGCATAGCTTACATCATC-GGAGAGAAAGGTTGTTTCAAA 1017
| || | || || | ||||| || ||||||||| | | |||||||| |||| |||||||
Sbjct 964 ATGTAT--AACCCCAATTACAACAAAGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAA 1020
Query 1018 GAAGTG-GA-TCT-CGGTGAATCTCCATACACAC 1048
| ||| || ||| | | |||||||| ||||||
Sbjct 1021 -A-GTGTGAATCTTCT-TAAATCTCCAAACACAC 1051
> AT1G67450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:25266163-25267359 FORWARD LENGTH=1197
Length=1197
Score = 104 bits (56), Expect = 2e-21
Identities = 166/215 (77%), Gaps = 24/215 (11%)
Strand=Plus/Plus
Query 669 CTTATTTTCTTTTGATTTTACAAGAGAGAGATTTG-GACCGCGTCTGCCTTTGCCC-TT- 725
|||| |||||||||||||||||||||||||||||| | | | |||| ||| | ||| ||
Sbjct 642 CTTACTTTCTTTTGATTTTACAAGAGAGAGATTTGTGTC-GTGTCTTCCTCT-CCCATTT 699
Query 726 CA--T-G-TA--TTTCGATGAT---GTATCTCTATCTGT-TGTTAAAGAAGAGCAGCTTG 775
|| | | || ||| |||||| ||| |||||||| | ||||| ||| || || ||||
Sbjct 700 CAAATTGCTAAGTTT-GATGATAATGTAGCTCTATCT-TCTGTTAGAGAGGAACATCTTG 757
Query 776 CGGTGTTAGTAAAGAGGTGGGATACA-TGTGAGATGGAGATTTGGGTGACGGAC-AAGAT 833
||||||| | || | ||||| | | | |||||||||||| |||||||| || |||||
Sbjct 758 TGGTGTTATTTAATAATTGGGA-AGAATCTGAGATGGAGATATGGGTGACA-ACTAAGAT 815
Query 834 TGAGCCCGATG-TGT--CGTGGAGCAGGTTCTTAA 865
||| ||| ||| ||| | ||||||| |||||||
Sbjct 816 TGAACCCAATGCTGTGTCATGGAGCAACTTCTTAA 850
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 678 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCTTTGCC 722
|||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1173 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGCC 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5