BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905096
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20750.1 | Symbols: GATA29 | GATA transcription factor 29 | ... 806 0.0
> AT3G20750.1 | Symbols: GATA29 | GATA transcription factor 29
| chr3:7254739-7256140 FORWARD LENGTH=715
Length=715
Score = 806 bits (436), Expect = 0.0
Identities = 578/644 (90%), Gaps = 19/644 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCAGGAATTGGACTTAACACTGAAGTTGGGTTTGCCAAATTCGACTGTTGACACA 60
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 89 ATGGAGCCGGAACTGGACTTAACACTGAAGTTGGGTTTGCCAAATTCGACTGTTGAGACA 148
Query 61 CATCTGAGCTTAAACCTTTCCACCACCACCACTAATCAGGGAGA-CAACAACAACGACGG 119
||||||| ||||| || | |||||||||||||| |||||||| | |||| | |||||
Sbjct 149 CATCTGACCTTAAGCCCTCCCACCACCACCACTGATCAGGGA-ACCAACGTCGTGGACGG 207
Query 120 CGGCGAAGTTTTGAACTACCGTCGGGCTCTTTGGGGAAATGATGAAGTGATCCACAACGA 179
||| |||||| | ||| ||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 208 CGGAGAAGTTATAAACCACCGTCGGGGTCTTTTGGGAGATGATGAAGTGATCCACAACGA 267
Query 180 AGCTGCAAGAAACAACGTGGAATTCAACATCAGAATCTACAATTACGTTTTTCAACAGAT 239
| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 268 ACCTACAAGAAACAACGTGGAGTTCAACATCAGAATCTACAATTACGTCTTTCAACAGTT 327
Query 240 TGCTGGCGCCCCCAACACCTTGAACTTTGCTCCTTATCCGATGCCATCTCCGGCACCGGC 299
|| ||| |||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 328 TGTTGGTGCCCCCAACACCTTGAACTTTGCTCCTTATCCGATG-C--CT------CCGTC 378
Query 300 TCCGGCACCAGCACCGGCTCCGGAGACTCCTCCGGCGAGTGATGAGTATGTTCTGATTGA 359
||||||||| ||| | || ||||||||||| | ||||||||||||||||||||||||
Sbjct 379 TCCGGCACCGGCA-C--CT---GAGACTCCTCCAGTGAGTGATGAGTATGTTCTGATTGA 432
Query 360 TGTTCCTGCTAGGAGAGTTCGTCGTAACAACTCTCA-GACGATGGCAAACACTTGGAACG 418
||||||||||||||||| |||||||||||||||| | | |||| ||||| ||||||| |
Sbjct 433 TGTTCCTGCTAGGAGAGCTCGTCGTAACAACTCT-ACGGTGATGACAAACTCTTGGAAGG 491
Query 419 AAAACGCAACCGCGAAGCGGCTTCGCGGTTGCGGTGGATCCTGCGGGGGAAGGATTGAAG 478
||||||||||| |||||||| |||||||||| ||||||| ||||||||| ||||||||||
Sbjct 492 AAAACGCAACCCCGAAGCGGATTCGCGGTTGTGGTGGATTCTGCGGGGGGAGGATTGAAG 551
Query 479 GGATGAAGAAGTGTACGAACATGAATTGTAACGCACTTAACACTCCTATGTGGCGCAGGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 552 GGATGAAGAAGTGTACGAACATGAATTGTAACGCACTTAACACTCCTATGTGGCGAAGAG 611
Query 539 GTCCTCTTGGTCCTAAGAGTTTATGCAATGCTTGTGGGATCAAGTTCAGGAAGGAGGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GTCCTCTTGGTCCTAAGAGTTTATGCAATGCTTGTGGGATCAAGTTCAGGAAGGAGGAAG 671
Query 599 AGAGGAAAGCCAAAAGAAATGGAGTGATTGAATTAGATAACTAA 642
||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 672 AGAGGAAAGCCAAAAGAAATGTAGTGATTGTATTAGATGACTAA 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5