BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905110 Length=219 Score E Sequences producing significant alignments: (Bits) Value AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:73135... 333 4e-91 > AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:7313538-7315883 REVERSE LENGTH=1551 Length=1551 Score = 333 bits (180), Expect = 4e-91 Identities = 210/223 (94%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 1 CAAGtttctttttcccttcttcaaactttctccttgtttcttttctacctactatcttct 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 6 CAAGTTTCTTTTTCCCTTCTTCAAACTTTCTCATTGTTTCTTTTCTACCTACTATCTTCT 65 Query 61 CCGTACCCTTTTCTATCAATTATCATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 66 CCGTACCCTTTTCTATCAATTAACATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 125 Query 121 TATATATACCCACATGTCGTAATACACTCATACAC--A--CAC-C-C--ACATATACATG 172 ||||||||| |||||||| |||||||||||||||| | ||| | | ||||||||||| Sbjct 126 TATATATACTCACATGTCCTAATACACTCATACACTCATACACACACCCACATATACATG 185 Query 173 CATATCTAGCTTTCACTGGTTTCTTAACACAACCCCATCATCT 215 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 186 CATATCTAGCTTTCACTGGTTTCTTAACACAACTCCATCATCT 228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9802211055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5