BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905110
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:73135... 333 4e-91
> AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:7313538-7315883
REVERSE LENGTH=1551
Length=1551
Score = 333 bits (180), Expect = 4e-91
Identities = 210/223 (94%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 1 CAAGtttctttttcccttcttcaaactttctccttgtttcttttctacctactatcttct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 6 CAAGTTTCTTTTTCCCTTCTTCAAACTTTCTCATTGTTTCTTTTCTACCTACTATCTTCT 65
Query 61 CCGTACCCTTTTCTATCAATTATCATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 66 CCGTACCCTTTTCTATCAATTAACATATGCTATTTTCCACTGTTTTGTCACATCGCACCT 125
Query 121 TATATATACCCACATGTCGTAATACACTCATACAC--A--CAC-C-C--ACATATACATG 172
||||||||| |||||||| |||||||||||||||| | ||| | | |||||||||||
Sbjct 126 TATATATACTCACATGTCCTAATACACTCATACACTCATACACACACCCACATATACATG 185
Query 173 CATATCTAGCTTTCACTGGTTTCTTAACACAACCCCATCATCT 215
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 186 CATATCTAGCTTTCACTGGTTTCTTAACACAACTCCATCATCT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5