BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905118

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20970.1 | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | ch...   497    2e-140


> AT3G20970.1 | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | 
chr3:7348197-7350305 FORWARD LENGTH=1168
Length=1168

 Score =  497 bits (269),  Expect = 2e-140
 Identities = 283/290 (98%), Gaps = 0/290 (0%)
 Strand=Plus/Plus

Query  1    GATGACTCTGAAACCGTAGCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCA  60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  GATGACTCTGAAACAGTAGCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCA  701

Query  61   GTCCAAGATGATGGTGGGGACATCGAGTATTGTGGGTTTGATCCGGAAAGCGGTATAGTG  120
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  702  GTTCAAGATGATGGTGGGGACATTGAGTATTGTGGGTTTGATCCGGAAAGCGGTATAGTG  761

Query  121  AAGCTGAGGATGCAAGGAGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  762  AAGCTGAGGATGCAAGGAGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCG  821

Query  181  GGAATCGAAAACATGTTGATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTC  240
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  822  GGAATCGAAAACATGCTGATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTT  881

Query  241  GATGGGGAAGATGAAGAGGGAACATTGTCTGGAGAGGTGAGAGTAGAGTA  290
            ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct  882  GATGGGGAAGATGAAGAGGGAACGTTGTCTGGAGAGATGAGAGTAGAGTA  931



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5