BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905131
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21130.1 | Symbols: | F-box and associated interaction doma... 584 9e-166
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 564 1e-159
AT3G21170.1 | Symbols: | F-box and associated interaction doma... 316 4e-85
> AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104
Score = 584 bits (316), Expect = 9e-166
Identities = 627/771 (81%), Gaps = 46/771 (6%)
Strand=Plus/Plus
Query 1048 GAGGATTTGGTAGTGGAAATACTCTCTAGGGTTCCGGCTGTATCTTTGGCAAGATTACGA 1107
||||||||| ||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 34 GAGGATTTGATAGTGGAGATACTCTCTAGAGTTTCGGCTGTATCTTTGGCACGATTACGA 93
Query 1108 TCAACATCC-AAGGAATGGAATGCTC-TGATCAAATATGGGAGACTTGCTAAGAAGCATT 1165
| |||||| || | |||||| |||| || | || | | |||||||||||||||||| |
Sbjct 94 ACTACATCCAAACG-ATGGAACGCTCTTG-TTAAGGACGAGAGACTTGCTAAGAAGCACT 151
Query 1166 CTGCTTATGCTCCAAGGCAGTCTTCTCTGGTTATCATGTTGATTAATTTTAGGGTTTATA 1225
|||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||
Sbjct 152 CTGCTTATGCTCCAAGGCAG---TCTCTGGTTATCACGTTGATTGATTCCAGGGTTTATT 208
Query 1226 TAGTGAGCATCAATCTCCACGGA-ATCAACAAT-AACAAGGATGTTCCATCTGCAAAGCT 1283
|| ||| | | | |||||| | || | | | || |||| || || ||||||||||||
Sbjct 209 TAATGAACGTGAGTCTCCA---ATATGGA-ATTGAA-AAGGTTGATCTATCTGCAAAGCT 263
Query 1284 AACAGGTCAATTTAGCCTAAAAGATCCTCTTTCCAAA-TCTTCAGAAGAAGTTGGTATAT 1342
|||||||||||| ||||||||||||||||||| |||| |||| ||| ||||||| ||||
Sbjct 264 AACAGGTCAATTCAGCCTAAAAGATCCTCTTT-CAAATTCTTTAGAGGAAGTTGATATAC 322
Query 1343 GTAGCGTCTTTCACTGCAACGGCTTGTTGCTATGCACCACCAAGGCCAATATACTGGTTG 1402
||| ||||||||||||| ||||||| || ||||||| |||||| | ||||| | | ||||
Sbjct 323 GTAACGTCTTTCACTGCGACGGCTTATTACTATGCAGCACCAAAGACAATAGATTAGTTG 382
Query 1403 TTTTGAATCCATGTTCAGGTGAAAAAATGTGGATCCAACCCAGAGTAATTACTTACAAGG 1462
||| |||||||||||||||||||| || |||||||||||| ||| | || | |||||||
Sbjct 383 TTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGA--AGTT-CCTACAAGG 439
Query 1463 AATTCA-ACCA-CTATGCTCTAGGTTACGATAACAGATCCTCCTGTTACAAAATCTTGAG 1520
| ||| | || ||||||| ||||||| ||||||| |||||| ||| |||||||||||||
Sbjct 440 TA-TCAGA-CATCTATGCTTTAGGTTATGATAACACATCCTCATGTCACAAAATCTTGAG 497
Query 1521 CG-TGGATCGATCTG-GCTATCGTTTCCCATTTCAAACTGAGTACCAAGTCTATGACTTT 1578
| |||||||||||| | | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 498 -GATGGATCGATCTGAG-GACCGTATCCCAATTCAAACTGAGTACCAAGTCTATGACTTT 555
Query 1579 ACCTCTAAATCGTGGCGGGTTGTTGGTGAGACTGGAGGCTTGCTCATACCACGTATTCAG 1638
|||||||||||||||| |||| ||||| | ||||||||||| |||||||| ||||| |
Sbjct 556 ACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGGAGGCTTGTTCATACCAAGTATTGGG 615
Query 1639 A---GG---CTTGGCATATCTGTGAAGGGAAATACTTACTGGCTTGCTAATAATGGACAA 1692
| || | |||| | |||||||||||||||||||||||||||||| || || | |
Sbjct 616 ACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTACTGGCTTGCTCTTACTGAAGAC 675
Query 1693 GGAC-G---TGT--TAT---CTTACAATGTTATGATTTTTCTACAGAGAGG-TTCCAAAG 1742
|||| | | | ||| |||| ||||| ||||||||| || || || || | | |
Sbjct 676 GGACCGCCATTTGATATGTTCTTATTATGTTTTGATTTTTCGACTGAC-GGATTTCGACG 734
Query 1743 TCTGTCTCTTCCCAAGGATGCTCCTAGATGGT-ATTCTGATGTGGCTTTAT 1792
|||||||||||| | |||| ||||| | | | ||| ||||||| ||||||
Sbjct 735 TCTGTCTCTTCCGACGGATACTCCTTG-TACTTATTATGATGTGTCTTTAT 784
Score = 555 bits (300), Expect = 7e-157
Identities = 706/894 (79%), Gaps = 60/894 (7%)
Strand=Plus/Plus
Query 5 ATCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCTCTGG 64
||||| ||||||||||| ||||||||||||||||||| ||| | ||||||| | | |||
Sbjct 26 ATCTTTCGGAGGATTTGATAGTGGAGATACTCTCTAGAGTTTCGGCTGTATC-T-T-TGG 82
Query 65 CACGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGACTTGCTA 124
||||||| ||| | ||||||||| |||||||| |||| || || || | |||||||||||
Sbjct 83 CACGATTACGAACTACATCCAAACGATGGAACGCTCTTGTTAAGGACGAGAGACTTGCTA 142
Query 125 AGAAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAATTTTA 184
|||||||||||||||| |||||||||||| | |||||||||||| ||||||| ||| |
Sbjct 143 AGAAGCACTCTGCTTATGCTCCAAGGCAG--T-CTCTGGTTATCACGTTGATTGATTCCA 199
Query 185 GGGTTTA-TT--T--A-GTGAG-CAT-CAATCT-CAA-T-AACAACGTTCCCCCATCTGC 233
||||||| || | | ||||| | | |||| | || | || || ||| | ||||||
Sbjct 200 GGGTTTATTTAATGAACGTGAGTC-TCCAATATGGAATTGAA-AAGGTTGATCTATCTGC 257
Query 234 AAAGGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTC-TATTTTTTCCA-AAGAAATC 291
|||| ||||| ||||||||||| |||||||||||||||| ||| ||| | | ||| |
Sbjct 258 AAAGCTAACAGGTCAATTCAGCCTAAAAGATCCTCTTTCAAATTCTTT--AGAGGAAGTT 315
Query 292 GATATACGTAGCACCTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGACAATAG 350
|||||||||| | ||||||| || ||||||||||| ||||||| ||||||||||||||
Sbjct 316 GATATACGTAACGTCTTTCAC-TGCGACGGCTTATTACTATGCAGCACCAAAGACAATAG 374
Query 351 ATTGGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGATA-TTCCT 409
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 375 ATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGA-AGTTCCT 433
Query 410 ACAAGG-ATTCCGAC-TGTTATGCTCTCGGTTACGATAACAAATCCTCCTGTTACAAAAT 467
|||||| || | ||| | | ||||| | ||||| ||||||| |||||| ||| |||||||
Sbjct 434 ACAAGGTAT-CAGACATCT-ATGCTTTAGGTTATGATAACACATCCTCATGTCACAAAAT 491
Query 468 CTTGAGGATGCATCGATTTTTTGTTGGTAACATA-TTGCACATTGAGT-CCGAAGTCTAT 525
|||||||||| |||||| | | ||| | | || || | ||||| || ||||||||
Sbjct 492 CTTGAGGATGGATCGATCTGAGGACCGTATCCCAATT-CAAACTGAGTACC-AAGTCTAT 549
Query 526 GACTTTGCTTCTCATTCGTGGAGAGGTGTTGGTGAGTCTACCAG-CTGGTTCATAACACA 584
|||||| | ||| | |||||| || || ||||| | || || || ||||||| || |
Sbjct 550 GACTTTACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGG-AGGCTTGTTCATACCA-A 607
Query 585 G-ATTAGTTGTCGT---CGTGGCGTGTGTGTGAAGGGAAATACTTACTGGCTTGCTGGTG 640
| ||| | ||| |||||| ||| |||||||||||||||||||||||||||| |
Sbjct 608 GTATTGGGACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTACTGGCTTGCTCTTA 667
Query 641 GTCAATACG-AGCCGCGAAATGATCAT-TTCTTACTACGTTTCGATTTTTCAAGTGA-GA 697
| || ||| | |||| | |||| || |||||| || |||| |||||||| | ||| |
Sbjct 668 CTGAAGACGGA-CCGCCATTTGAT-ATGTTCTTATTATGTTTTGATTTTTCGACTGACG- 724
Query 698 GATTCCAATTTCTGTCTCTCCC-AGCGGATGCTCGTCGTGA-TTATGGTAATATGGCTTT 755
|||| | | ||||||||| || | ||||| ||| | || | |||| | || || ||||
Sbjct 725 GATTTCGACGTCTGTCTCTTCCGA-CGGATACTCCTTGT-ACTTATTATGATGTGTCTTT 782
Query 756 ATCAGTGACTAAAGAAAATCAACAACTTTGTTTGCTAGCTACCCAAGT-ATTAGATATAA 814
||||||||||| |||| | |||||||||||| || | || | || || | | | |
Sbjct 783 ATCAGTGACTAGAGAAGAGCAACAACTTTGTATGTT---TAAG-A-GTCATG-GCTCTGA 836
Query 815 ATGTATGGATGGCAACTAAGATTGAGAGTACCGGAGCCATTTTGTGGAGCAAGT 868
| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 837 GT-TATGGATAGCAACTAAGATGGAGAGTACCGGAGCCATTTCATGGAGCAAGT 889
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 564 bits (305), Expect = 1e-159
Identities = 662/827 (80%), Gaps = 54/827 (7%)
Strand=Plus/Plus
Query 1 ATGCATCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCT 60
||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||
Sbjct 1 ATGCATCTTCCGGAGGATTTGGTCCTGGAGATACTCTCTAAGGTTCCGGCTGTA---TCT 57
Query 61 CTGGCACGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGAC-T 119
||||||||||| |||||||| | || |||||||||| |||||||| ||||| || | |
Sbjct 58 CTGGCACGATTTCGATCGACTTGCAGAAGATGGAACGCTCTGGTCGTCGATGGAAG-CTT 116
Query 120 TGCTAAGAAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAA 179
|||||||||||||| ||| |||| ||||||||||| |||| | ||||| |||||||| |
Sbjct 117 TGCTAAGAAGCACTATGCGTACGGTCCAAGGCAGTATCCTATAGTTATTATGTTGATCGA 176
Query 180 TTTTAGGGTTTATTTAGT--G---AG-----CAT-CAA-TCTCAATAACAACGTTCCCCC 227
||||||||||||||||| | || ||| || | ||||||||||| | ||||
Sbjct 177 GTTTAGGGTTTATTTAGTGAGTATAGATCTCCATGGAATTAACAATAACAACGGTGCCCC 236
Query 228 ATCTGCAAAGGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTCTATTTTTTCCA-AAG 286
|||||| ||| ||||| ||||||||||| ||||||| |||||||||| || || || |||
Sbjct 237 ATCTGCGAAGCTAACAGGTCAATTCAGCCTAAAAGACCCTCTTTCTAATTCTT-CAGAAG 295
Query 287 AAATCGATATACGTAGCACCTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGAC 345
|| | |||||||||| | |||||||| || |||||||||||||||||| ||||||||||
Sbjct 296 AAGTTGATATACGTAACGCCTTTCAC-TGCGACGGCTTATTGCTATGCTGTACCAAAGAC 354
Query 346 AATAGATTGGTTGTTTGGAATCCATGTTCAGGTGAAAC-AAGGTGGATCCAACCTAGATA 404
| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| |
Sbjct 355 AGGAGATTGGTTGTTTGGAATCCATGTTCAGGGGAAACCAAG-TGGATCCAACCCAGAAA 413
Query 405 TTCCTACAAGGATTCCGACTGT-TATGCTCTCGGTTACGATAACAAATCCTCCTGTTACA 463
|||||||||||| || |||| | ||||| || ||||||||||||| |||||||| ||||
Sbjct 414 TTCCTACAAGGAATCAGACT-TATATGCCCTAGGTTACGATAACAGATCCTCCTCCTACA 472
Query 464 AAATCTTGAGGATGCATCGATTTTTTGTTGGTAACATATTGCACATTGAGTCCGAAGTCT 523
|||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 473 AAATCTTGAGGATGCATCCC------GTTGGTAACCCATTTCACATTGAGTCCGAAGTCT 526
Query 524 ATGACTTTGCTTCTCATTCGTGGAGAGGTGTTGGTGAGTCTACC-AGCTGGTTCATA-AC 581
|||||||||||||||||||||||||| ||||||||| | ||||| | || |||| |
Sbjct 527 ATGACTTTGCTTCTCATTCGTGGAGAAGTGTTGGTGTGACTACCGA-CTTCCACATACAA 585
Query 582 ACAGATT-AGTTGTCGTCGTGGCGTGTGTGTGAAGGGAAATACTTACTGGCTTGCTGGTG 640
|| || | || || | |||| || ||| ||||||| |||||||||| ||||| |
Sbjct 586 AC-GAATGAGA-GT--TA-TGGCATGAATGTCAAGGGAACTACTTACTGGTTTGCTCTTA 640
Query 641 GTCAATAC-GA-GC-CG-C-GAA-AT-GATCATTTCTTACTACGTTTCGATTTTTCAAGT 693
|| || || | | | | || || | || |||||||||| |||| |||||||||||
Sbjct 641 GTAAAGACTGGTGGTCATCTGACGATCG-TCGTTTCTTACTAAGTTTTGATTTTTCAAGA 699
Query 694 GAGAGATTCCAATTTCTGTCTCTCCCAGCGGATGCTCGTCGTGAT-TA--TGGTAATATG 750
|||||||| |||| |||| |||| || ||||||| | | || || | || | ||
Sbjct 700 GAGAGATTTCAATGTCTGCCTCTTCCGGCGGATG-T--TAAAAATCTACATCTTACTGTG 756
Query 751 GCTTTATCAGTGACTAAAGAAAATCAACAACTTTGTTTGCTAGCTAC 797
| |||||| ||||||| |||| | |||||||| ||| || | |||||
Sbjct 757 GTTTTATCGGTGACTAGAGAAGAGCAACAACTATGTATGTTTGCTAC 803
> AT3G21170.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7419976-7421160 FORWARD LENGTH=1185
Length=1185
Score = 316 bits (171), Expect = 4e-85
Identities = 363/451 (80%), Gaps = 32/451 (7%)
Strand=Plus/Plus
Query 7 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCTACTGTATCTTCTCTGGCA 66
||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||
Sbjct 16 CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTAT-TTCTA-G-CA 72
Query 67 CGATTGCGATCGACATCCAAAAGATGGAACACTCTGGTCAAAGATGGGAGACTTGCTAAG 126
||||| ||||| ||||||||| ||||||||||| || |||||||||||| |||| |||||
Sbjct 73 CGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTTCTAAG 132
Query 127 AAGCACTCTGCTTACGCTCCAAGGCAGTCTCCTCTGGTTATCATGTTGATTAATTTTAGG 186
||||||||| || | ||||||||||| ||| | ||| | || |||||||| || || |
Sbjct 133 AAGCACTCTTCTAATGCTCCAAGGCA--CTC-TATGGCTCTCGTGTTGATTGATCATAAG 189
Query 187 GTTTATTTAGTGAGCATC-AATCTC-----AATA-ACAA---CGTTCCCCCATCTGCAAA 236
||||||| |||||| ||| |||||| ||| |||| |||| | |||| || ||
Sbjct 190 GTTTATTCAGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCATATGTTAA 248
Query 237 GGTAACATGTCAATTCAGCTTAAAAGATCCTCTTTCTATT--TT-TTCCAA-AGAAATCG 292
|||||||||| || ||| ||||||| | |||||||| | || ||| || |||| |||
Sbjct 249 CATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTC-AACAGAAGTCG 307
Query 293 ATATACGTAGC-AC--CTTTCACTTG-GACGGCTTATTGCTATGCAATACCAAAGACAAT 348
||||| | || || |||||||| | || |||||||||||||||| ||||| ||| ||
Sbjct 308 ATATA-G--GCCACGTCTTTCACT-GCGATGGCTTATTGCTATGCACCACCAAGGACTAT 363
Query 349 AGATTGGTTGTTTGGAATCCA-TGTTCAGGTGAAACAAGGTGGATCCAACCTAGATATTC 407
||| |||| ||||||||||| | ||||||||||||||||||||| ||||| |||| ||
Sbjct 364 AGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAGATTTTG 422
Query 408 CTACAAGGATTCCGACTGTTATGCTCTCGGT 438
||||||| | ||||| ||||||||||||
Sbjct 423 CTACAAGAAAGATGACTGCTATGCTCTCGGT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5