BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905145
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 ... 2390 0.0
AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA li... 1319 0.0
> AT3G21240.1 | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase
2 | chr3:7454269-7457379 REVERSE LENGTH=1964
Length=1964
Score = 2390 bits (1294), Expect = 0.0
Identities = 1522/1631 (93%), Gaps = 20/1631 (1%)
Strand=Plus/Plus
Query 4 AGTAGTAGTAATGACGTCATTTTCCGGTCGAAATTGCCGGATATTTATATCCCTAACCAC 63
||| |||||||||||||||||||||| |||| |||||| ||||| || ||||||||||||
Sbjct 112 AGT-GTAGTAATGACGTCATTTTCCGATCGAGATTGCCTGATATATACATCCCTAACCAC 170
Query 64 CTACCACTCCACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTG 123
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 171 CTCCCACTCCACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTG 230
Query 124 ATCAACGGTCCCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCGGAAA 183
|||||||||||||||||||| ||||||||||||||||| || |||| | ||| ||||||
Sbjct 231 ATCAACGGTCCCACCGGCGAAGTATACACCTACGCCGATGTCCACGTAACATCTCGGAAA 290
Query 184 CTCGCCGCCGGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCT 242
||||||||||||||||| || |||||||||| ||||||||||| |||||| |||||||
Sbjct 291 CTCGCCGCCGGTCTTCATAA-CCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCT 349
Query 243 CCCGAACTCTCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCA 301
|||||||||||| |||||||||||||||||||| || || || | |||||||||||||||
Sbjct 350 CCCGAACTCTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTC-CTTCATCGGCGCAATCA 408
Query 302 CCACTTCAGCGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCG 361
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 409 CCACCTCCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCCG 468
Query 362 CCGCGAAACTCATCGTCACTCAATCTCGTTACTTCGATAAAATCAAGAACCTCCAAAACG 421
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 469 CGGCGAAACTCATCGTCACTCAATCCCGTTACGTCGATAAAATCAAGAACCTCCAAAACG 528
Query 422 ACGGCGTCTTGATCGTCACCACCGACTCCGACGTCATCCCCGAAAACTGCCTCCGCTTCT 481
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 529 ACGGCGTTTTGATCGTCACCACCGACTCCGACGCCATCCCCGAAAACTGCCTCCGTTTCT 588
Query 482 CCGAGTTGACTCAGTCCGGCG-ACCTCCGA---G--TCAACT-CC---G-AGATTTCGCC 530
||||||| |||||||||| | ||| ||| | |||| | || | ||||||||||
Sbjct 589 CCGAGTTAACTCAGTCCGAAGAACC-ACGAGTGGACTCAA-TACCGGAGAAGATTTCGCC 646
Query 531 AGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGGTCTGCCCAAGGGAGTGAT 590
||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 647 AGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGGGTCTCCCCAAAGGAGTGAT 706
Query 591 GCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAACCCAAA 650
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 707 GCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAATCCGAA 766
Query 651 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATCTACGC 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 767 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATATACGC 826
Query 711 TCTTAACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGATCTTGATAATGCCTAA 770
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 827 TCTCAACTCCATCATGCTCTGTAGTCTCAGAGTTGGTGCCACGATCTTGATAATGCCTAA 886
Query 771 ATTCGAGATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 830
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTTCGAAATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 946
Query 831 CGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 890
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 947 CGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 1006
Query 891 TTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTGAAGATGCTAT 950
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1007 CTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAGGAGCTTGAAGATGCTAT 1066
Query 951 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCGGGTCC 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1067 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCAGGTCC 1126
Query 1011 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAATCAGGAGCATG 1070
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1127 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAGTCAGGAGCATG 1186
Query 1071 TGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACCGGAGATTCCTT 1130
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1187 TGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACAGGAGATTCTTT 1246
Query 1131 GCCTAGGAATCAAGCC-GGCGAAATCTGCATTCGTGGCAACCAAATCATGAAAGGCTATC 1189
||||||||| ||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1247 GCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTGGCAACCAAATCATGAAAGGCTATC 1305
Query 1190 TCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGCTTCACACAGGAG 1249
||||||| || |||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1306 TCAATGACCCCTTGGCCACGGCATCGACGATCGATAAAGATGGTTGGCTTCACACTGGAG 1365
Query 1250 ACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGATTGAAAGAACTCA 1309
|||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1366 ACGTCGGATTTATCGATGATGACGACGAGCTTTTCATTGTGGATAGATTGAAAGAACTCA 1425
Query 1310 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCACC 1369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1426 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCATC 1485
Query 1370 CTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAGATGCTGGTGAGGTTCCTG 1429
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1486 CAGAAATCAATGATGTTGCTGTCGTCGCCATGAAGGAAGAAGATGCTGGTGAGGTTCCTG 1545
Query 1430 TGGCGTTTGTGGTGAGAACGAAAGAGTCGAATATATCCGAAGATGAAATCAAGGAATTCG 1489
| ||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1546 TTGCGTTTGTGGTGAGATCGAAAGATTCAAATATATCCGAAGATGAAATCAAGCAATTCG 1605
Query 1490 TGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCTTCACTGACTCTATTC 1549
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1606 TGTCAAAACAGGTTGTGTTTTATAAGAGAATCAACAAAGTGTTCTTCACTGACTCTATTC 1665
Query 1550 CAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1609
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 CTAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1725
Query 1610 TAATGAACTAG 1620
|||||||||||
Sbjct 1726 TAATGAACTAG 1736
> AT1G51680.1 | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA
ligase 1 | chr1:19158752-19161552 REVERSE LENGTH=2029
Length=2029
Score = 1319 bits (714), Expect = 0.0
Identities = 1338/1636 (82%), Gaps = 56/1636 (3%)
Strand=Plus/Plus
Query 15 TGACGTCATTTTCCGGTCGAAA-TTGCCGGATATTTATATCCCTAACCACCTACCACTCC 73
||||||||||||||| || ||| || ||||||||||| ||||| ||||||||| | ||||
Sbjct 151 TGACGTCATTTTCCGATC-AAAGTTACCGGATATTTACATCCCGAACCACCTATCTCTCC 209
Query 74 ACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTGATCAACGGTC 133
|||||||||||||| |||||||||| || |||||| |||| || || | |||||||| |
Sbjct 210 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACTAAGCCTTGCCTAATCAACGGAC 269
Query 134 CCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCG-GAAACTCGCCGCC 192
| |||||| | || ||||| ||| ||||||| |||| ||| || || ||| ||||||||
Sbjct 270 CAACCGGCCACGTGTACACTTACTCCGACGTCCACGTCATCTCCCGCCAAA-TCGCCGCC 328
Query 193 GGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCTCCCGAACTC 251
| |||| || | ||||||| |||||| |||||||||| |||||||||||||| ||||
Sbjct 329 AATTTTCACAA-ACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAACTG 387
Query 252 TCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCACCACTTCAG 310
||| ||| | |||||| |||||||||| || || | || |||||||| | |||| | |
Sbjct 388 TCCCGAATTCGTCCTCTCTTTCCTCGCCGCCTC-CTTCCGCGGCGCAACCGCCACCGCCG 446
Query 311 CGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCGCCGCGAAAC 370
| ||||| |||||||||||||||||||| |||||||||||||||||||| | | ||||
Sbjct 447 CAAACCCTTTCTTCACTCCGGCGGAGATAGCTAAACAAGCCAAAGCCTCCAACACCAAAC 506
Query 371 TCATCGTCACTC-AATCTCGTTACTTCGATAAAATC-AAGAACCTCCAAA--ACGACGGC 426
|||| |||| | || |||||||| |||| |||||| || || || ||| |||||||
Sbjct 507 TCATAATCAC-CGAAGCTCGTTACGTCGACAAAATCAAACCACTTCAAAACGACGACGGA 565
Query 427 GTCTTGATCGTCACCA-C--CGACTCCG-A--CGT--C-ATCCCCGAAAACTGCCTCCGC 477
|| | |||||| || | |||| || | ||| | ||||| ||| ||||||||||
Sbjct 566 GTAGTCATCGTCTGCATCGACGACAACGAATCCGTGCCAATCCCTGAAGGCTGCCTCCGC 625
Query 478 TTCTCCGAGTTGACTCAGTC--C-GGCGA--CCTCCG-AGTCA---ACTC---CGAGATT 525
||| |||||||||||||||| | ||| | || | ||||| |||| ||||||
Sbjct 626 TTCACCGAGTTGACTCAGTCGACAACCGAGGCATCAGAAGTCATCGACTCGGTGGAGATT 685
Query 526 TCGCCAGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGG-TCTGCCCAAGGG 584
|| || |||||||| ||||| || |||| |||||||||||||||||| | | || || ||
Sbjct 686 TCACCGGACGACGTGGTGGCACTACCTTACTCCTCTGGCACGACGGGAT-TACCAAAAGG 744
Query 585 AGTGATGCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAA 644
||||||||| || || || || || ||||||||||| || ||||||||||||||||||||
Sbjct 745 AGTGATGCTGACTCACAAGGGACTAGTCACGAGCGTTGCTCAGCAAGTCGACGGCGAGAA 804
Query 645 CCCAAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATAT 704
||| |||||||| ||| |||| || ||||| || |||||||| ||||| ||||| |||||
Sbjct 805 CCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGCCCATGTTTCATAT 864
Query 705 CTACGCTCTT-AACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGA-TCTTGATA 762
||||||| || ||||| |||||| | ||| |||| ||||| ||||| ||| || |||||
Sbjct 865 CTACGCT-TTGAACTCGATCATGTTGTGTGGTCTTAGAGTTGGTGCGGCGATTC-TGATA 922
Query 763 ATGCCTAAATTCGAGATCACTCT-CTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGT 821
||||| || || ||||||| ||| | | || |||| ||| || ||||||||||| |||||
Sbjct 923 ATGCCGAAGTTTGAGATCAATCTGC-TATTGGAGCTGATCCAGAGGTGTAAAGTGACGGT 981
Query 822 GGCTATGGTCGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTA 881
|||| | | || || ||||| || || || ||||| ||||| ||||||||||||||||
Sbjct 982 GGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCTTCGGAGACGGAGAAGTA 1041
Query 882 TGATCTGAGTTCGGTTAGGA-TGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTG 940
|||| |||| || | || || |||| || ||||| || ||||||||||||||||||||||
Sbjct 1042 TGATTTGAGCTC-GATAAGAGTGGTGAAATCTGGTGCTGCTCCTCTTGGTAAAGAACTTG 1100
Query 941 AAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAG 1000
||||||| ||| ||| ||||||||||| ||||| || |||||||| || || ||||| |
Sbjct 1101 AAGATGCCGTTAATGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGATACGGAATGACGG 1160
Query 1001 AAGCGGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAG-AGCCGTTTCCAGTGAAA 1059
|||| ||||| |||||||||||||||||||| ||||| |||| | || ||||| || ||
Sbjct 1161 AAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC-AAAGGAACCTTTTCCGGTTAAG 1219
Query 1060 TCAGGAGCATGTGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACC 1119
|||||||| |||||||| || || || || || |||||||| ||| ||||||||||||||
Sbjct 1220 TCAGGAGCTTGTGGTACTGTTGTAAGAAATGCTGAGATGAAAATAGTTGATCCAGACACC 1279
Query 1120 GGAGATTC-CTTGCCTAGGAATCAAGCCGGCGAAATCTGCATTCGTGG-CAACCAAATCA 1177
|||||||| ||| | ||||||||| |||| || || || |||||||| || ||| ||||
Sbjct 1280 GGAGATTCTCTTTCG-AGGAATCAACCCGGTGAGATTTGTATTCGTGGTCA-CCAGATCA 1337
Query 1178 TGAAAGGCTATCTCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGC 1237
||||||| || ||||| |||||| ||||| ||| ||| || ||||||||||||||||
Sbjct 1338 TGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGATAAAGACGGTTGGC 1397
Query 1238 TTCACACAGGAGACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGAT 1297
|||| || ||||| ||||||| ||||||||||| |||||||||||||| || ||| |||
Sbjct 1398 TTCATACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTCATCGTTGATCGAT 1457
Query 1298 TGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCC 1357
|||||||||| |||||||| ||||| ||||| || ||||| |||||||||||| || | |
Sbjct 1458 TGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCGGCTGAGCTAGAGGCTTTGC 1517
Query 1358 TCATAGGTCACCCTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAG-ATGCT 1416
|||| ||||| ||||| || | |||||||||||| ||||||||||||||||||| | |||
Sbjct 1518 TCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCAATGAAAGAAGAAGCA-GCT 1576
Query 1417 GGTGAGGTTCCTGTGGCGTTTGTGGTGAGAA-CGAAAGAGTCGAA-TATATCCGAAGATG 1474
||||| |||||||| || |||||||||| || |||| || ||| | | |||| |||||||
Sbjct 1577 GGTGAAGTTCCTGTTGCATTTGTGGTGA-AATCGAAGGATTCGGAGT-TATCAGAAGATG 1634
Query 1475 AAATCAAGGAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCT 1534
| | ||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1635 ATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCT 1694
Query 1535 TCACTGACTCTATTCCAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAA 1594
||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1695 TCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAA 1754
Query 1595 GACTAGCAAATGGATT 1610
|||||||||||||||
Sbjct 1755 AACTAGCAAATGGATT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5