BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905161
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21360.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1563 0.0
> AT3G21360.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:7522804-7524580
FORWARD LENGTH=1598
Length=1598
Score = 1563 bits (846), Expect = 0.0
Identities = 945/994 (95%), Gaps = 2/994 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAATTGTTGGTGGAAGAAACTCGAATCCCACAGCAAAAGCACTACAAATCCAAA 60
||||||||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 62 ATGGCGGAACTGTTGTTGGTGGAAACTCCAATCCCACAGCAAAAGCACTACGAATCCAAA 121
Query 61 CCATTCCCGGCGGTGATATCACCACCGTCTTCGTCGATTCCGATTCCTGCTCTGTCTCTC 120
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 122 CCATTCCCGGCGGTGATATCACCACCGTCTGCTTCGATTCCAATTCCTGCTCTGTCTCTC 181
Query 121 CCACTATTCACTCAGAGTATCAAGAA-TCAGAAACCCTACCTCGATTCTCTCTTGCACGA 179
|||||||||||||| | |||||| || |||||||| ||| ||||||||||||||||||||
Sbjct 182 CCACTATTCACTCAAACTATCAA-AACTCAGAAACACTATCTCGATTCTCTCTTGCACGA 240
Query 180 ATCCGGAGCAGTGCTTTTCAGAGGTTTTCCGGTGAATTCCGCCGAGGATTTCAACGACGT 239
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 ATCCGGAGCAGTGCTATTCAGAGGTTTTCCGGTGAATTCCGCCGATGATTTCAACGACGT 300
Query 240 CGTTGAAGCTTTCGGTTTCGATGAGTTTCCTTACGTCGGAGGCGCTGCTCCTCGCACTAG 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 CGTTGAAGCTTTCGGTTTCGATGAGCTTCCTTACGTCGGAGGCGCTGCTCCTCGCACTAG 360
Query 300 CGTCGTCGGCCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCA 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTCGTCGGTCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCA 420
Query 360 CCACGAGATGGCTCAGGTGCCTGAGTTTCCATCAAAGTTGTTCTTTTACTGTGAGATTGT 419
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCACGAGATGGCTCAGGTTCGTGAGTTTCCATCAAAGTTGTTCTTTTACTGTGAGATTGA 480
Query 420 GCCTAAGTGTGGTGGAGAGACTCCAATTGTGTTGAGTCATGTTGTGTATGAGAGAATGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCTAAGTGTGGTGGAGAGACTCCAATTGTGTTGAGTCATGTTGTGTATGAGAGAATGAA 540
Query 480 AGAGAAACATCCAGAGTTTGTTCAAAGATTGGAGGAACATGGTTTGCTTTATGTTAGGGT 539
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 541 AGATAAACATCCAGAGTTTGTTCAGAGATTAGAGGAACATGGTTTGCTTTATGTTAGGGT 600
Query 540 TTTAGGTGAAGATGATGATCCTTCATCTCCCATTGGCCGTGGTTGGAAATCTACTTTCTT 599
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 601 TTTAGGTGAAGATGATGATCCTTCATCTCCCATTGGACGTGGTTGGAAATCTACATTCTT 660
Query 600 GACCCATGACAAGAACCTTGCTGAGCAAAGGGCGGCTAATTTGGGAATGAAATTGGAATG 659
|||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 661 AACCCATGACAAGAACCTTGCTGAGCAAAGGGCGGTTGATTTGGGAATGAAACTGGAATG 720
Query 660 GACAGAGGATGGTGGAGCCAAGACGGTAATGGGTCCGATACCGGCTATCAAATATGACGA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 GACAGAGGATGGTGGAGCCAAGACGGTAATGGGTCCGATTCCGGCTATCAAATATGACGA 780
Query 720 GTCCAGAAACCGCAAAGTATGGTTTAATAGTATGGTAGCTGCTTATACGGGCTGGGAGGA 779
||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 781 GTCGAGAAACCGTAAAGTATGGTTTAACAGCATGGTAGCTGCTTATACGGGATGGGAGGA 840
Query 780 TAAGCGGAATGATCCAAGAAAGGCTGTGACTTTTGGGGATGGAAAGCCTTTACCCGAGGA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 841 TAAGCGGAATGATCCAAGAAAGGCTGTGACTTTTGGGGATGGAAAGCCTTTACCTGCGGA 900
Query 840 TATAGTTCATGACTGTCTCAGAATCCTTGAAGAGGAATGTGTTGCTGTTCCGTGGCAGAG 899
|||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 901 TATAGTCCATGATTGTCTTAGGATTCTTGAAGAGGAATGTGTTGCTGTTCCGTGGCAGAG 960
Query 900 AGGAGATGTTTTGCTTATAGATAACTGGGCGGTTCTTCACTCTCGAAGACCATTTGAACC 959
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 961 AGGAGATGTTTTGCTTATAGATAACTGGGCGGTTCTTCATTCTCGAAGACCGTTTGATCC 1020
Query 960 TCCTCGCCGGGTTCTTGCATCACTCTGCAAATAG 993
|||||| || ||||||||||||||||||||||||
Sbjct 1021 TCCTCGTCGAGTTCTTGCATCACTCTGCAAATAG 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5