BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905172
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21465.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1720 0.0
AT4G15640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 957 0.0
> AT3G21465.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G15640.1);
Has 38 Blast hits to 38 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7560720-7563466
FORWARD LENGTH=1461
Length=1461
Score = 1720 bits (931), Expect = 0.0
Identities = 1100/1178 (93%), Gaps = 25/1178 (2%)
Strand=Plus/Plus
Query 1 ATGCAATATCTATCGCACTCTCGTAGAATCGCTAGGG---TG---------GCTCTCATG 48
||||||||||||||||||||||||||||||||| ||| || |||||| |
Sbjct 31 ATGCAATATCTATCGCACTCTCGTAGAATCGCTCGGGCTTTGAAACCACTAGCTCTCGTC 90
Query 49 GAGACCGATGTGAGATTTGTATACAATGCCTCTCATGTTGTTCAACGGCCGAGCCATCGA 108
|||||||||||||||||||||| ||||| ||| | || || | | | ||||||
Sbjct 91 GAGACCGATGTGAGATTTGTATCCAATG-CTC-C---TT-CTC-A-TGTTG-TTCATCGA 141
Query 109 TCTCTTTCCCACTCTGTATTTCCAGGAAAAATGGATACTTGCAGTCAGTTGTACGCTCAA 168
||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||
Sbjct 142 TCTCTTTCCCACTCTGTATTTCCAGGAAAAATGGATACTTGTAATCAGTTATATGCTCAA 201
Query 169 TCACCTATGACGGGGTTGATGATGCTGAGAGCTAACTT-TACCTCTGAAACAAAACATGT 227
|||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||
Sbjct 202 TCACCTATGACGGGGTTGATGATGTTGAGAGCTAACTTCT-CCTCTGAAGCAAAACATGT 260
Query 228 CGAGAATCCTACAGAGGCTGTCAAGGAATTACATGGTAAAATACTTGATTCTGTGAATGT 287
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 261 TGAGAATCCTACAGAGGCTGTCAAGGAATTACATAGTAAAATACTTGATTCTGTGAATGT 320
Query 288 CAAGAGATCAATGCCTCCAAATGCTTGGTTGTGGTCATTGATTGAGAACTGTCGGAACGA 347
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 321 CAAGAGATCGATGCCTCCAAATGCTTGGTTGTGGTCATTGATTGACAACTGTCGGAACGA 380
Query 348 GGATGACGTTAGTTTTCTGTTTGATGTTCTGCAGAATCTCCGGAGATTTAGATTGTCCAA 407
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 381 GGATGACATTAGTTTTCTGTTTGATGTTCTGCAGAATCTACGGAGATTTAGATTGTCCAA 440
Query 408 TCTTCGTATTCATGACAACTTTAATTGCAATCTATGCCAGCAAGTTGCTAAGACTTGTGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TCTTCGTATTCATGACAACTTTAATTGCAATCTATGCCAGCAAGTTGCTAAGACTTGTGT 500
Query 468 ACGTGTGGGTACAATTAACCATGGTAAAAGGGCTCTTTGGAAACATAATGTTCACGGGCT 527
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 501 ACGTGTGGGGGCAATTAACCATGGTAAAAGGGCTCTTTGGAAACATAACGTTCATGGTTT 560
Query 528 AACTCCCAGCGTTGCATCTGCACACCATTTACTGTCATACGCATTAGAGCACAAGGACGC 587
||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 561 GACTCCTAGTGTTGCATCTGCACACCATTTACTGTCATACGCATTAAAGCATAAGGACGC 620
Query 588 GAAACTCATGGATGAAGTAATGAAACTCCTGAAAATGAATAACCTGCCTTTACAACCTGG 647
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 621 CAAACTGATGGATGAAGTTATGAAACTCCTGAAGATGAATAACCTGCCTTTACAACCTGG 680
Query 648 GACAGCGGATTTAGTTTTCAGGATCTGTCATGATACAGATAACTGGGATCTATTAGCTAA 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 681 GACAGCGGATTTAGTTTTCAGGATCTGTCATGATACAGATAACTGGGATCTATTAGTTAA 740
Query 708 GTACTCGAAGAAATTCTGCAAAGCTGGAGTCAAGCTCAGGAAGACCACATTTGATGTCTG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTACTCGAAGAAATTCTGCAAAGCTGGAGTCAAGCTCAGGAAGACCACATTTGATGTCTG 800
Query 768 GATGGAATTTGCTGCCAAAAGAGGAGACACAGAGTCGTTATGGAATGTTGATAAACTGAG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GATGGAATTTGCTGCCAAAAGAGGAGACACAGAGTCGTTATGGAATGTTGATAAACTGAG 860
Query 828 ATCTGAGACTTACACTCAACACACCCTTTCCGGTGCTTTTTCATGTGCAAAGGGCTTTCT 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 861 ATCTGAGACTTACACTCAACACACCCTTTCCGGTGCTTTTTCATGTGCAAAGGGTTTTCT 920
Query 888 GCTAGAACATAAACCTGAAGCAGCTGCTGCTGTAATCCAAATCATCTGTCAGGCGTATCC 947
|||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||
Sbjct 921 GCTAGAACATAAACCTGAAGAAGCTGCTGCAGTCATCCAAATTATCTGTCAGGCGTATCC 980
Query 948 TGATGAGAAGAAGTCAGCACTTGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGCCTGT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 981 TGATGAGAAGAAGTCAGCACTTGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGTCTGT 1040
Query 1008 GGACATTATCAAGCACCAAAATGAAGAAGACAAGAAGG-CTGTAGCTGCATCACTGAAAT 1066
|||||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||
Sbjct 1041 TGACATTATCAAGCACCAAAATGAACAAGATAAGAAGGAC-GTAGCTGCATCACTGAAAT 1099
Query 1067 CTGACATCCCTGCAATGGTCAATGCTTTGGTAAACTCGGGTTTGAGAGTGAGAGTGGATT 1126
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1100 CTGACATCCCTGCAATGGTCAATGCTTTGGTAAACTCTGGTTTGAGAGTAAGAGTGGATT 1159
Query 1127 TAGATGAGTTAAAGAAGAATGAAGCTCTTCTCATCTGA 1164
|| |||||||||| ||||||||||||||||| | ||||
Sbjct 1160 TAAATGAGTTAAACAAGAATGAAGCTCTTCTTAGCTGA 1197
> AT4G15640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G21465.1);
Has 38 Blast hits to 38 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8918985-8921930
REVERSE LENGTH=1511
Length=1511
Score = 957 bits (518), Expect = 0.0
Identities = 828/976 (85%), Gaps = 27/976 (3%)
Strand=Plus/Plus
Query 204 CTTTACCTCTGAAAC--AAAA-CATGTCGAG-AATCCTACAGAGGCTGTCAAGGAATTAC 259
|||||| |||||| | |||| | || || | |||||||||| | |||| ||||| || |
Sbjct 288 CTTTACGTCTGAAGCGGAAAAGCTTG-CGGGAAATCCTACAGTGACTGTGAAGGATTTGC 346
Query 260 ATGGTAAAATACTTGATTCTGTGAATGTCAAGAGATCAATGCCTCCAAATGCTTGGTTGT 319
||| |||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 347 ATGATAAAATGCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGT 406
Query 320 GG-TCATTGATTGAGAACTGTCGGAA-CGAGGATGACGTT-AGTTTTCTGTTTGATGTTC 376
|| | |||||||||||||||| ||| | ||||||| || | | |||| ||||| ||||
Sbjct 407 GGCTG-TTGATTGAGAACTGTCAGAATC-AGGATGATATTCA-TCTTCTCTTTGACGTTC 463
Query 377 TGCAGAATCTCCGGAGATTTAGATTGTCCAATCTTCGTATTCATGACAACTTTAATTGCA 436
| |||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 464 TTCAGAATCTACGGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCA 523
Query 437 ATCTATGCCAGCAAGTTGCTAAGACTTGTGTACGTGT-GGGTACAATTAAC-CATGGTAA 494
|||||||||| |||||||||||||||||||||||||| ||| | ||| || | ||| ||
Sbjct 524 ATCTATGCCAACAAGTTGCTAAGACTTGTGTACGTGTTGGGG-CTATTGACTC-TGGAAA 581
Query 495 -AAGGGCTCTT-TGGAAACATAATGTTCACGGGCTAACTCCCAGCGTTGCATCTGCACAC 552
|||| || || |||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 582 GAAGG-CT-TTGTGGAAACATAATGTTCACGGTTTGACTCCCAGTGTTGCATCTGCACAC 639
Query 553 CAT-TTACTGTCATACGCATTAGAGCACAAGGACGC-GAAACTCATGGATGAAGTAATGA 610
||| ||| ||||||| ||| ||||||||||| | | ||| |||||||| |||||||||
Sbjct 640 CATCTTA-TGTCATATGCACTAGAGCACAAGAATTCTGAA-CTCATGGAAGAAGTAATGC 697
Query 611 AACTCCTGAAAATGAATAACCTGCCTTTACAACCTGGGACAGCGGATTTAGTTTTCAGGA 670
|||||||||||| |||| | |||||| ||||||| || ||||| ||||||||||| ||||
Sbjct 698 AACTCCTGAAAACGAATGATCTGCCTCTACAACCCGGTACAGCAGATTTAGTTTTTAGGA 757
Query 671 TCTGTCATGATACAGATAACTGGGATCTATTAGCTAAGTACTCGAAGAAATTCTGCAAAG 730
||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| |||||
Sbjct 758 TCTGTCATGATACAGATAAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAG 817
Query 731 CTGGAGTCAAGCTCAGGAAGACCACATTTGATGTCTGGATGGAATTTGCTGCCAAAAGAG 790
||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 818 CTGGAGTTAAGTTGAGGAAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAG 877
Query 791 GAGACACAGAGTCGTTATGGAATGTTGATAAACTGAGATCTGAGACTTACACTCAACACA 850
| || ||||||||| ||||||| || ||||||| |||||| ||||| |||| ||||||||
Sbjct 878 GTGATACAGAGTCGCTATGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACA 937
Query 851 CCCTTTCCGGTGCTTTTTCATGTGCAAAGGGCTTTC-TGCTAGAACA-TAAACCTGAAGC 908
| ||||| ||| ||||| ||||||||||| |||| | |||||| | |||||||||||
Sbjct 938 CTCTTTCTACTGCCTTTTCTTGTGCAAAGGG-TTTCCTACTAGAA-AGTAAACCTGAAGA 995
Query 909 AGCTGCTGCTGTAATCCAAATCATCTGTCAGGCGTATCCTGATGAGAAGAAGTCAGCACT 968
||||||||| || ||||| || ||||| || || |||||||||||||| ||||| ||| |
Sbjct 996 AGCTGCTGCCGTCATCCAGATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCTGCAAT 1055
Query 969 TGAGGCTGAATTCAAGAAGCTGGTAAACGAGTGGCCTGTGGACATTATCAAGCACCAAAA 1028
| | ||||||| |||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1056 TTCGACTGAATTTGAGAAACTTGTAAACGAGTGGCCTGTGGACGTTATCAAGCACCAAAC 1115
Query 1029 TGAAGAAGACAAGAAGGCTGTAGCTGCATCACTGAAATCTGACATCCCTGCAATGGTCAA 1088
|| ||||| ||||||||| | ||||| ||| ||||||||| || ||| ||||||| ||
Sbjct 1116 CGACGAAGATAAGAAGGCTCTTGCTGCTTCATTGAAATCTGTGATTCCTTCAATGGTTAA 1175
Query 1089 TGCTTTGGTAAACTCGGGTTTGAGAGTGAGAGTGGATTTAGATGAGTTAAAGAAGAATGA 1148
| | ||| ||| ||||||||| | |||||| |||||| | ||||||||||| ||||| ||
Sbjct 1176 TACATTGCTAAGCTCGGGTTTAAAAGTGAGCGTGGATCTGGATGAGTTAAACAAGAACGA 1235
Query 1149 AGCTCTTCTCATCTGA 1164
||||||||||| ||||
Sbjct 1236 AGCTCTTCTCAGCTGA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5